Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01324 ATGGAGGGTGGGAATAGGGTTCCGGGGTCAGGGGAGGGTGACCCTTCTTACTGGCTGGACGCCTGTGAGGACATATCATGCGATTTCATTGATTTTGATGTGTCTTCAATTGTGTCTGAGCAGCCTGACAACGCTTCCAACCAGGATTTCTTTGGTGGGATTGATCGAATCCTTGATAGCATAAAGAATGGTGCACACTCCAAGCTGCAGCACTCTCTGACTCCACTTCCTGCCTCCAATGGTTCCGCGAAGAATGAATTGGTTGCAGAGAAGCATGGTCGCACGGCAGATGCTTTTCAGCATCCACGGGCTGAAACTAACGGCTGCAATAAGTTGTTGAATGGTAATGATGAAGGGAGAGTTTTGGTTGGTTGTTTTGTGGAAAACGGAGGCCTGAGCAGAGGGCGCGATCAGTTGAGGGAATATGATGTTGATGGTGAAGAGAGATACTGCAAAAGGGCGAGGCTTGGCAACTATAAGAATGACAGACATTATTCTGGTAGAGTTAATTATCAATTCAAGGAGAAAGAGAGATGTTTTAATAGGAAGAGGCCTCGAGATAGTAGAGATGAGATTGATGTTAGGAGGGACAAAGATAGTAGCAGGAAAAAAGAACATTATGGCAATTGTGGCTGGAGAGATGTTAGAGATAGGGATTGGAGGGATAGAGAGCAGAGGGGTTACTGGGAGAGGGATAAATTGGGTTCTAATGACATGGTTTTTCGCATGGGCACTTGGGAAGCCGATAGGGATCGAGAAGAGAAAATGGCTAATGACACAAAACAGGAAAGCAATGGAAAGCTTGACAAGACATCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAGAAAGCTAGACAGTATCAATTGGATGTTCTTGAGCAGGCAAAGACGAAGAATACTATAGCTTTTCTTGAAACTGGAGCAGGGAAGACCCTCATTGCAGTTCTTCTCATCAAAAGTATACACGAGAGTTTGCAAAAGCAAAATAAGAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTCCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGGACTGGCTATCAAGTGGGTCATTACTGTGGAGAAATGGGTCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTCGACACTAAACATGTCTTAGTCATGACAGCTCAAATTCTTCTGAACATCTTGAGGCATAGCATCATTAAAATGGAAGCAATCAATCTCCTAATTCTTGATGAGTGCCATCATGCTGTTAAGAAACATCCATATTCGCTGGTGATGTCTGAGTTCTACCACACAACTCCTAAAGAGAACAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTAAACTTGAAGGGAGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGAAATCTTGAGAGCAAGCTGGATTCAATAGTTTGTACCATTAAAGATCGCAAGGAGCTGGAGAGACATGTGCCCATGCCCTCTGAAGTTGTGGTGGAGTATGACAAAGCCGGCAGTTTATGTTATCTACATGAGCAAATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCGAGTTCAAGGAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGCGCAAAGGAGGAGCTGCGACAAGTATATGGTGTTTCTGAGAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATCAATTATGCACTTGGTGAACTGGGGCAGTGGTGTGCATTTAAGGTTGCACAATCTTTTCTAGCAGCTTTGCAGAATGATGAAAGGGCTAACTACCAACTAGATGTCAAGTTTCAGGAATCTTATCTTAGCAAAGTTGTCTCTCTTCTGAAATGTCAGTTGTCAGAGGGTGCAGTTTCTGACAAACATGCTGAAGTTGATGACTCAAAGCATGAAACAACTTGCAATGGGACTGAACCTGAAGAGATTGAGGAAGGAGAACTTCCAGACAGTCATGTTGTCTCTGGTGGGGAGCATGTGGATGTCATAATAGGAGCAGCTGTGGCTGATGGAAAGGTGACCCCCAAGGTGCAGGCACTCATCAAAATACTACTGAAGTATCAGAACACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTACCCAAGGTCTTTGCAGAGCTCCCATCTCTTAGTTTTGTGAAATGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCCAAGTTCCGTGATGGGAGGGTTACATTGTTAGTTGCTACTAGTGTTGCTGAAGAAGGGCTTGATATCCGGCAATGCAATGTCGTTATTCGCTTTGACCTTGCAAAGACTGTTCTGGCATACATTCAATCTAGGGGTCGTGCTAGAAAGCCTGGGTCTGATTACATCCTGATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTTAGGAATGCAAGAAACAGCGAGGAGACCTTACGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGATTGATTTCAGTAGATACCCGACCGGGAACAGTTTACCAGGTCAAGTCAACCGGGGCAGTTGTGAGCTTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGTTCCCAACTACCAAGCGACAGGTATTCAATTCTTCGCCCTGAGTTTATCATGGAGAAGCATGAAAAACCAGGATGTCCCACTGAATATTCTTGCAAGCTTCAACTACCTTGTAATGCACCATTTGAAAATCTTGAGGGTCCTATCTGCAGTTCAATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAATTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCGGACAAAGGAAGTGGGGGAGAAAGAGAAAAGGCTGAGCAAAATGATGAAGGGGATCCACTTCCAGGGACTGCTAGACACAGGGAGTTCTATCCTGAAGGTGTGGCTGACACACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTACAACAATTCCAAATTGTTTCATCTTTATATGTATTCCGTGGAGTGCGAAAATGTAGGAATTTCAAAGGATCCGTTCTTAACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTAGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACAAAGGCATCTCTTGTCTTTAGAGGGTCAATAGATATCAGTGAGAGTCAGTTGGCGACCTTGAAAAGCTTTCATGTAAGGTTAATGAGCATTGTCTTGGATGTGGATGTTGAACCTTCTACCACTCCTTGGGATCCCGCAAAAGCATATTTATTTGTCCCAATGATTAGCGATAAGTCTGTAGATCCTGTGAAACAAATTGATTGGTTTCTGGTCGAGACAATAATTGGATCGGATGCATGGAAAAATCCCCTCCAGAAGGCTCGGCCAGATGTTTACCTTGGTACTAATGAGAGAACTTTAGGTGGAGACAGAAGGGAGTATGGATTTGGAAAATTGCGTCATGGCATGGTGTTTGGGCAAAAAGCACATCCAACCTATGGAATCAGAGGAGCTGTAGCCCAGTTTGATGTGGTAAAAGCTTCAGGATTGGTTCCTAACAGAGATGCCATGCAAACACAAAAACATATCAGTTTGACGACCAAAGGAAAATTGATGATGGCGGATACTTGTACTAACGCAGAGGATCTGGTTGGGAAAATTGTAACTGCTGCACACTCTGGGAAGAGATCAGAGAAACTTTGTCTCCTCCTGTACAACAGAGGGTGCATGTGGCTACTTGTTATTTTGTTGATTTATTGTAGGTATGGGGTTGATTTGATTTACAAGCAACAACCGCTTATAAGAGGGCGTGGTGTGTCATACTGTAAGAATCTTCTTTCCCCTCGATTCGAACACAGTGAAGCACATGAAGGAGAATCTGAAGAATCTCATGACAAAACATATTACGTGTTCCTTCCTCCTGAACTATGCCTAGTACACCCTCTTCCTGGATCACTTGTTCGGGGTGCCCAGAGATTGCCTTCAATCATGAGGAGGGTTGAAAGTATGCTACTTGCAGTTCAGCTTAGGAATATGATAAATTATCCTGTGCAGGCTTTGAAGATCTTGGAGGCCTTGACTGCTGCATCTTGTCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTTGGAGATGCTTACCTGAAATGGGTCGTTAGTCGATTTCTTTTCCTAAAATACCCGCAGAAACATGAGGGCCAACTTACTAGGATGAGGCAACAAATGGTCAGCAACATGGTTTTATATCAGTATGCATTAAGTAAAGGCCTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCAAGATGGGCGGCTCCTGGGGTACTGCCTGTCTTCGATGAGGATACCAAGGATGGAGAGTCAACTTTATTTGACCAGGATACATCCATTTCTAACACTGAGAGAATGGATTGTCACACTGATGAATATGAAGATGAGCTGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACAGGGTACTGTCCAGCAAGACACTTGCTGATGTTGTGGAAGCACTCATTGGTGTATATTATGTCCAAGGAGGTAAGAGTGCCGCTAACCACCTTATGAACTGGATTGGCATTCAGATAGAGTTTGATCCTGATGAGATGGACTGTGCAAGAAAGCCTTTCAATGTTCCAGAGAGCATACTTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTTTGAATATGAAGTTTAAAGACAGGGGGCTTCTGGTAGAAGCCATTACTCATGCGTCCAGACCATCATCAGGAGTATCCTGTTATCAGCGGTTGGAATTTGTTGGTGATGCAGTTTTGGACCATCTTATTACCAGGCATTTGTTTTTCACTTACACAAATTTGCCACCGGGACGATTGACTGACCTTCGGGCTGCTGCTGTAAATAATGAAAATTTTGCTCGTGTTGCAGTTAAACACAATCTTCATGTGCATCTCCGACATGGGTCTAGTGCCTTAGAAAAGCAGATCAAAGAATTTGTCAAGGAAGTTCAGGATGAATTGTCAAAGCCGGGATTTAACTCCTTTGGCCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCTGGCTCCATTTTTCTTGATAGTGGAAGGGATACTACTATCGTTTGGAAGGTTTTTCAGCCTCTATTGCATCCCATGGTTACACCAGAGACTCTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCCGAAGGCTTAGAATACAGAGCAAGTCGTGTTGGCAATCTGGCCACTGTTGAAGTATTCATTGATGGCGTGCAAGTTGGGGCCGCTCAAAATCCACAAAAGAAAATGGCTCAGAAATTAGCTGCCAGAAATGCCCTAGCTGCTTTGAAAGAAAAGGAGGTGGCAAAGAATCAGAAGAATGATGAAAATGGGAAAAAGAATGGAAACCAAACATTTACCAGACAAACATTAAACGATATTTGTTTGCGAAGAAATTGGCCTATGCCATTCTATCGATGTGTGAATGAGGGCGGTCCAGCACATGCGAAGCGTTTCACATTTGCGGTGCGCGTCAATACTACTGATAGAGGATGGACAGATGAATGTGTTGGAGAGCCAATGCCCAGTGTCAAGAAGGCCAAAGACTCTGCTGCTGTTCTTCTCTTAGAACTACTAAATAAATTATACTCATGA 5793 0.4392 MEGGNRVPGSGEGDPSYWLDACEDISCDFIDFDVSSIVSEQPDNASNQDFFGGIDRILDSIKNGAHSKLQHSLTPLPASNGSAKNELVAEKHGRTADAFQHPRAETNGCNKLLNGNDEGRVLVGCFVENGGLSRGRDQLREYDVDGEERYCKRARLGNYKNDRHYSGRVNYQFKEKERCFNRKRPRDSRDEIDVRRDKDSSRKKEHYGNCGWRDVRDRDWRDREQRGYWERDKLGSNDMVFRMGTWEADRDREEKMANDTKQESNGKLDKTSEEAKERVPEEKARQYQLDVLEQAKTKNTIAFLETGAGKTLIAVLLIKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELERHVPMPSEVVVEYDKAGSLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAFKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKHAEVDDSKHETTCNGTEPEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGCPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKAEQNDEGDPLPGTARHREFYPEGVADTLKGEWILSGKDAYNNSKLFHLYMYSVECENVGISKDPFLTQVSDFAVLFGNELDAEVVLSMSMDLFIARTVTTKASLVFRGSIDISESQLATLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMISDKSVDPVKQIDWFLVETIIGSDAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMVFGQKAHPTYGIRGAVAQFDVVKASGLVPNRDAMQTQKHISLTTKGKLMMADTCTNAEDLVGKIVTAAHSGKRSEKLCLLLYNRGCMWLLVILLIYCRYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEESHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLRNMINYPVQALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESTLFDQDTSISNTERMDCHTDEYEDELEDGELESDSSSYRVLSSKTLADVVEALIGVYYVQGGKSAANHLMNWIGIQIEFDPDEMDCARKPFNVPESILRSVDFDALEGALNMKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGSIFLDSGRDTTIVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRVGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVAKNQKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01324 1930 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 851 IPR001650 -
Aip06g01324 1930 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1852 1925 - -
Aip06g01324 1930 MobiDBLite consensus disorder prediction 634 657 - -
Aip06g01324 1930 SUPERFAMILY RNase III domain-like 1366 1571 IPR036389 GO:0004525|GO:0006396
Aip06g01324 1930 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 291 468 IPR014001 -
Aip06g01324 1930 CDD DSRM_DCL_plant 1858 1919 - -
Aip06g01324 1930 Gene3D - 278 522 IPR027417 -
Aip06g01324 1930 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1852 1927 IPR014720 -
Aip06g01324 1930 Pfam Type III restriction enzyme, res subunit 286 450 IPR006935 GO:0003677|GO:0005524|GO:0016787
Aip06g01324 1930 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 879 974 IPR005034 GO:0016891
Aip06g01324 1930 ProSiteProfiles Ribonuclease III family domain profile. 1393 1553 IPR000999 GO:0004525|GO:0006396
Aip06g01324 1930 SMART PAZ_2_a_3 1223 1374 IPR003100 GO:0005515
Aip06g01324 1930 MobiDBLite consensus disorder prediction 250 280 - -
Aip06g01324 1930 MobiDBLite consensus disorder prediction 965 992 - -
Aip06g01324 1930 Gene3D Ribonuclease III domain 1372 1565 IPR036389 GO:0004525|GO:0006396
Aip06g01324 1930 Pfam PAZ domain 1290 1370 IPR003100 GO:0005515
Aip06g01324 1930 ProSiteProfiles Ribonuclease III family domain profile. 1594 1742 IPR000999 GO:0004525|GO:0006396
Aip06g01324 1930 Gene3D Ribonuclease III domain 1591 1765 IPR036389 GO:0004525|GO:0006396
Aip06g01324 1930 Gene3D paz domain 1287 1348 - -
Aip06g01324 1930 CDD RIBOc 1391 1571 IPR000999 GO:0004525|GO:0006396
Aip06g01324 1930 CDD DEXHc_dicer 283 482 - -
Aip06g01324 1930 Pfam Dicer dimerisation domain 879 967 - -
Aip06g01324 1930 Pfam Ribonuclease III domain 1407 1553 IPR000999 GO:0004525|GO:0006396
Aip06g01324 1930 Pfam Ribonuclease III domain 1629 1742 IPR000999 GO:0004525|GO:0006396
Aip06g01324 1930 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 239 1928 - -
Aip06g01324 1930 SUPERFAMILY dsRNA-binding domain-like 1724 1847 - -
Aip06g01324 1930 SMART DRBM_3 1853 1926 IPR014720 -
Aip06g01324 1930 SMART DRBM_3 1769 1830 IPR014720 -
Aip06g01324 1930 MobiDBLite consensus disorder prediction 634 649 - -
Aip06g01324 1930 Coils Coil 1822 1842 - -
Aip06g01324 1930 CDD RIBOc 1610 1765 IPR000999 GO:0004525|GO:0006396
Aip06g01324 1930 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 818 IPR027417 -
Aip06g01324 1930 SMART riboneu5 1609 1765 IPR000999 GO:0004525|GO:0006396
Aip06g01324 1930 SMART riboneu5 1389 1573 IPR000999 GO:0004525|GO:0006396
Aip06g01324 1930 Pfam Helicase conserved C-terminal domain 687 804 IPR001650 -
Aip06g01324 1930 Gene3D - 677 843 IPR027417 -
Aip06g01324 1930 SMART ultradead3 280 483 IPR014001 -
Aip06g01324 1930 MobiDBLite consensus disorder prediction 968 992 - -
Aip06g01324 1930 Gene3D - 1858 1928 - -
Aip06g01324 1930 SUPERFAMILY RNase III domain-like 1593 1763 IPR036389 GO:0004525|GO:0006396
Aip06g01324 1930 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1768 1831 IPR014720 -
Aip06g01324 1930 MobiDBLite consensus disorder prediction 182 207 - -
Aip06g01324 1930 SUPERFAMILY dsRNA-binding domain-like 1856 1926 - -
Aip06g01324 1930 ProSitePatterns Ribonuclease III family signature. 1629 1637 IPR000999 GO:0004525|GO:0006396
Aip06g01324 1930 Gene3D - 1766 1844 - -
Aip06g01324 1930 SMART helicmild6 720 806 IPR001650 -
Aip06g01324 1930 CDD SF2_C_dicer 684 814 - -
Aip06g01324 1930 PANTHER DICER-RELATED 239 1928 - -
Aip06g01324 1930 Gene3D Dicer dimerisation domain 874 975 IPR038248 -
Aip06g01324 1930 ProSiteProfiles PAZ domain profile. 1290 1350 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01324 Aip-Chr6 20505972 20515964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01324 703 846 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 1.62e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01324 K11592 - gmx:100811631 3282.27