Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01318 atgaagtcgaaagCCGCCATCGTTGCTCAAGCTAGGCTTCCGAGGCCATCGCAGAACTTTCTAGAAGGTTGTGGTGGTAGTAACGTTATTGTTGAAGGATCTTATTTCACTTTGAGTACTGGAGAACAAGGAGGGATGATGGTGGCGGGGTACATTGATGAGGATGAGCTTCTGAACATGCCGAGTATGATCGAAGACATGGCCAGGGGAATGCAGGGTGAAGAAGGACCCACACTCCCAAGCCCACCTTCGACGACGACATCATCAGCAAGTGCTGCTCCTCCGGTGAGTTCCCAGCGAAGCTTCTCCTCTGCAACAAATGCGACCGAGGCTATTACATCTTCTATCTCCTACCTATCCTTCCTTCCGTTCCCAAAGGCTCTTGGTTATGCGCCTCTTGTTCCCACAGTGACACCAAGAAACCAAAATCATCACTCACGCATTATACGGAATGTTGGTCACCCTTCCATTCCCACTCCCACTCACTTATTATCATTACTCTTGCTTAGCTTTAATTTGATGGAGAGGCTTCAGCTTCAAGGACCCCTTGACTCCTCTTTGTTTGGTGAGCACCTAGAAGTGAATTGCTTGGAACAAGGTTTTGTCGATAGAGAGAGTAACTTCAAAGTCAAGGAGGATGAACATGAAGAACAAACTTTGATATCAAGCTTGGAGGGTAACATGCCATTCCTTCAGATGCTTCAAAGCGTGGAATCCCCTCCATTTTCTCCCTTCAAAGATCCAAACTTTCAGGCACTATTAAGACCGCAGCATCTTAAGAAACCATGGGAAGGGACGCCCTACATACCCACATTGGAATCCGAAATCAATGAATTTGAACAGTACACACGTTCAGGCAGTGATGCTGCTTGGGCTAATAAGAAGACAAACTCCCAGCATAAAGATACCAGGTTATCGAAACATCATCATCAGGAACGGGTGAGGAAGAGGAAGAGAGGAAGAGAAAGTAAAGACAAGGACAAGGAAGAGGTTGAGAACCAGCGCATGACCCACATTGCTGTGGAACGCAATAGGCGGCGCCAAATGAATGAGCATCTCAGTGTTCTAAAGTCTCTCATGCACCCTTCCTATATTCAAAGGGGTGACCATGCATCAATCATAGGGGGTGCAATAGACTTTGTGAAGGAATTGGAGCAGTTAGTTGAAACCCTTGAGGCCCAAAGAAGGATGAGAAACAAGGAAGAAGAGGATGGTGGAATGAGGTCATCAGCATCATCCAGCAGGAAAGAAGAAGCAAGTGGTGGCAATGAGGCTAAGGCAGAGAGAAGGTCAAAGGTGGGAGGCATTGAGGTGAGTGTGATTCAAAGCCATGTCAACTTGAGAATTCAGTGCGAGAAGAGAGCAGGGCTATTGATAAATGCAATCGTTGCATTGGAGAACCTAAGGCTCCCTATTCTTCATCTCAACATCACATCCTCAGATTCTTCAGTTCTCTATTCTTTCAGTCTCAAGATTGAAGAAGACAGCAAGTTAGGGTCAGCAAATGAAATTGCAGAGGCAGTTGATAAGATATTGACTTCATTAACACATTAA 1554 0.455 MKSKAAIVAQARLPRPSQNFLEGCGGSNVIVEGSYFTLSTGEQGGMMVAGYIDEDELLNMPSMIEDMARGMQGEEGPTLPSPPSTTTSSASAAPPVSSQRSFSSATNATEAITSSISYLSFLPFPKALGYAPLVPTVTPRNQNHHSRIIRNVGHPSIPTPTHLLSLLLLSFNLMERLQLQGPLDSSLFGEHLEVNCLEQGFVDRESNFKVKEDEHEEQTLISSLEGNMPFLQMLQSVESPPFSPFKDPNFQALLRPQHLKKPWEGTPYIPTLESEINEFEQYTRSGSDAAWANKKTNSQHKDTRLSKHHHQERVRKRKRGRESKDKDKEEVENQRMTHIAVERNRRRQMNEHLSVLKSLMHPSYIQRGDHASIIGGAIDFVKELEQLVETLEAQRRMRNKEEEDGGMRSSASSSRKEEASGGNEAKAERRSKVGGIEVSVIQSHVNLRIQCEKRAGLLINAIVALENLRLPILHLNITSSDSSVLYSFSLKIEEDSKLGSANEIAEAVDKILTSLTH 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01318 517 MobiDBLite consensus disorder prediction 396 411 - -
Aip06g01318 517 MobiDBLite consensus disorder prediction 287 334 - -
Aip06g01318 517 MobiDBLite consensus disorder prediction 301 321 - -
Aip06g01318 517 PANTHER MAX DIMERIZATION, MAD 198 513 - -
Aip06g01318 517 SMART finulus 339 390 IPR011598 GO:0046983
Aip06g01318 517 MobiDBLite consensus disorder prediction 71 102 - -
Aip06g01318 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 401 IPR036638 GO:0046983
Aip06g01318 517 Gene3D - 331 405 IPR036638 GO:0046983
Aip06g01318 517 MobiDBLite consensus disorder prediction 78 102 - -
Aip06g01318 517 MobiDBLite consensus disorder prediction 396 430 - -
Aip06g01318 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 384 IPR011598 GO:0046983
Aip06g01318 517 PANTHER TRANSCRIPTION FACTOR BHLH70 198 513 - -
Aip06g01318 517 Coils Coil 381 404 - -
Aip06g01318 517 Pfam Helix-loop-helix DNA-binding domain 334 385 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01318 Aip-Chr6 20388856 20396409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01318 233 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 42.136 3.74e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g01318 HLH 6.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01318 - - ahf:112759031 642.499