Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01304 ATGTCCGAGGGTGCGGAGGTCAATGAGCGTGTCGACATTGATGAGGAGAATTATATGGAAGAGATTGATGATGATGTTGAAGAACAGATAGATGACCATGGACAAGAAGCACCTGAACCTCCACATGAACACAAGGGGTCACCTGCTGAGGCTGCTGCTAAAGATCAGTTGCCTGAACAAGAACAAGAAAGAAGTGACACTGCTGCTGAAATTCTCCAAGATGGGCAGAAACCATCTTCTGTCAATGAAGATGAGGAGAAGGAAAAGCATGATGAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAGTCTTCATTGGTGGGCTTCCTCGCGATGCGCATGAAGATGATTTGAAGGCACTGTGCGAGCCAATGGGTGACGTTCTAGAGGTGCGACTAATGAAAGACAAGGACACCGGCGAAAACAGGGGTTATGCTTTTGTGGCTTTTAAAACAAAGGAGGTAGCACAAAAGGCCATTGAAGACATACACAACAAGGAATTTAAGGGCAAAACCTTGAGGTGTTCACTGTCTGAAACAAAACACAGATTGTTCATTAGTAACATTCCAAAGACTTGGACGGAGGATGAGTTCAGGAAACATGTCGAGGCTGTTGGTCCGGGTGTTGAAAACATCGAGCTCATCAAGGACCCCCAAAACCCCACTAGGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGACTATTCGCGGCAAAAGATGTCAATTGCAAGTTTTAAGCTGGGTGGTAATACCCCAAATGTCACATGGGCAGATCCAAAGATCTCACCTGATCATTCTTCATCTTCACAGGTTAAAGCTCTATATGTTAAAAACATACCTGAGAATGTTACTACTGAACAACTAAAAGAACTATTCCGGCGACATGGAGAAGTGACAAAAGTGGTCATGCCACCTGGTAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGCGGTCAAGTGTATTGAAAGCTGTCAAAGATACAGAAAAATATGAAATTAATGGCCAAGTGCTTGAAGTTGTTCTTGCCAAGCCTCAAACTGATAGAAAAGCTGAAGTTAGTTATGCCTACAATCCTGTACTTCATCCAAGCCATCTTATACATCCCGGATATGGTAGTTTTTCTGGAAACCTTTACGGCTCTTTAGCTGCAGGATATGGTGTTGCTACAGGTTATCAACAG 1206 0.4337 MSEGAEVNERVDIDEENYMEEIDDDVEEQIDDHGQEAPEPPHEHKGSPAEAAAKDQLPEQEQERSDTAAEILQDGQKPSSVNEDEEKEKHDELLALPPHGSEVFIGGLPRDAHEDDLKALCEPMGDVLEVRLMKDKDTGENRGYAFVAFKTKEVAQKAIEDIHNKEFKGKTLRCSLSETKHRLFISNIPKTWTEDEFRKHVEAVGPGVENIELIKDPQNPTRNRGFAFVLYYNNACADYSRQKMSIASFKLGGNTPNVTWADPKISPDHSSSSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSVLKAVKDTEKYEINGQVLEVVLAKPQTDRKAEVSYAYNPVLHPSHLIHPGYGSFSGNLYGSLAAGYGVATGYQQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01304 402 Gene3D - 182 262 IPR012677 -
Aip06g01304 402 MobiDBLite consensus disorder prediction 13 32 - -
Aip06g01304 402 SMART rrm2_1 102 175 IPR003954 GO:0003676
Aip06g01304 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Aip06g01304 402 PANTHER GEO13361P1-RELATED 2 402 - -
Aip06g01304 402 SUPERFAMILY RNA-binding domain, RBD 96 180 IPR035979 GO:0003676
Aip06g01304 402 MobiDBLite consensus disorder prediction 33 70 - -
Aip06g01304 402 MobiDBLite consensus disorder prediction 1 97 - -
Aip06g01304 402 SMART rrm1_1 182 259 IPR000504 GO:0003723
Aip06g01304 402 SMART rrm1_1 102 175 IPR000504 GO:0003723
Aip06g01304 402 SMART rrm1_1 277 349 IPR000504 GO:0003723
Aip06g01304 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 263 IPR000504 GO:0003723
Aip06g01304 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 353 IPR000504 GO:0003723
Aip06g01304 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Aip06g01304 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 346 IPR000504 GO:0003723
Aip06g01304 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 244 IPR000504 GO:0003723
Aip06g01304 402 Gene3D - 8 181 IPR012677 -
Aip06g01304 402 SUPERFAMILY RNA-binding domain, RBD 181 354 IPR035979 GO:0003676
Aip06g01304 402 Gene3D - 264 363 IPR012677 -
Aip06g01304 402 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 402 - -
Aip06g01304 402 MobiDBLite consensus disorder prediction 79 96 - -
Aip06g01304 402 CDD RRM_SF 103 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01304 Aip-Chr6 20007059 20009573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01304 103 371 Eukaryotic Initiation Factors Gene Family AT1G22760 27.907 3.80e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01304 K13161 - gmx:100790907 650.973