Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01281 atggcacagtgcttaggtagagactctagggaaggaaaAAGTGTTGATTCCGATGCCACCAAGCCACGGGACGGTACAAAGGCAGTGCCACATCCTGAGACCAAAAGTCACAATTCAAATGAAGTAGAACCTAATGTGGTAGGTGGCGTTACTGGCGAGAATCCTGCATCGAATTTGCAAGAGGATTTGGAGGCTAATAATTTGGAAGGAAATAATGTTGAGGAGGCTTGCATGCATGATGAACCAGGCTGGGAGCAAGTTGTGAGGAAAGGTAAAACCAAGCTGGGTCAGAAGCAATCTAACAAGGTCCAAAGAGGCATTCAATCCAGAACCGATTCGGGTAGAGTAATCAGGTCCACCATTCACTTCTCTCACACAAATGGATCCAGCTCCTATCGCGCTAGGGTCGGGTCACGAGTCAAGGTCGGACACAGCGCTTTCCGTGTTGGTGAGACGTCGATCTCCTCAACCCGACACACCCCAGTGTCTTGCGGGTCctctctccagaaacgaccaaggccggggtccctacagagcttgccagttgagaagaatggaggcacggtggtggaagcATCGTCATGTCTTCCTGCAACCGTGAAGGAGGGTGTTACCGTGGCGGTTCCATTGGAGAAGGAAGGCGCATTGCCGACTGTTACTACGTCGGTAGGCGAGATTAAAGAGATATTCCATGGAGATCCGGCAAACCtgaaggtcacgggagtcacttccgctggacaagcctcgAGTTCATCTCCTTTCTGCTTTTGCCATAAAGCTATTGAGATCGAGCCAAGGCACCTCCTTCATCAACGCGTTTCCAGATCTAATCGCAAAGCATTTGAGATTGAGAGAAAGTGCCTCTTCGGTCAACTCTTCTCCGCCAATGACGCTCGTATTCTCCATCGGCATTCTATCCCTTCCTTTTTAGATCTTTTAGACATACCCTTTGAAGGAAGCATCTGTGGCTATGACAAGGAAGAGAAAGCGGCCAGAGCTTATGATCTCGCTGCTTTCAAATACTGGGATCCAACCACTACCACCAACTTTCCGGTTTCCAACTATGAGAAGGAGCTAGAGGAAAGCAGTGGATTCTCTAGGGGGGCGTCTCTATACAGAGGAGTAACTAGGCACCACCAGCATGGGCGATGGCAGGCAAGAATAGGCAGAGTAGCCGGAAACAAAGACCTGTACCTTGGCACTTTAAGAATTTCACCTCCACAGTTTCTTCTTGTAAATAAAGGTTTGAAGACAAAGGGTGTGAAGTACAAAAGAGTAAATCTTGAAGGGCAAGCCCTGAAGCTGAATAGAGCCAAGCTTGAGGCATGCTTAACATGTCCTTTGTGCAATAAATTGTTACAGTACACCTCCTCCTCCTTCTTGCTTTTTTATCTTTCTTTCTTATCTTTCTTTCTCTTTTTTCTTTTTATTTTTAGTTTCGATCGGATTTAA 1452 0.416 MAQCLGRDSREGKSVDSDATKPRDGTKAVPHPETKSHNSNEVEPNVVGGVTGENPASNLQEDLEANNLEGNNVEEACMHDEPGWEQVVRKGKTKLGQKQSNKVQRGIQSRTDSGRVIRSTIHFSHTNGSSSYRARVGSRVKVGHSAFRVGETSISSTRHTPVSCGSSLQKRPRPGSLQSLPVEKNGGTVVEASSCLPATVKEGVTVAVPLEKEGALPTVTTSVGEIKEIFHGDPANLKVTGVTSAGQASSSSPFCFCHKAIEIEPRHLLHQRVSRSNRKAFEIERKCLFGQLFSANDARILHRHSIPSFLDLLDIPFEGSICGYDKEEKAARAYDLAAFKYWDPTTTTNFPVSNYEKELEESSGFSRGASLYRGVTRHHQHGRWQARIGRVAGNKDLYLGTLRISPPQFLLVNKGLKTKGVKYKRVNLEGQALKLNRAKLEACLTCPLCNKLLQYTSSSFLLFYLSFLSFFLFFLFIFSFDRI 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01281 483 MobiDBLite consensus disorder prediction 39 57 - -
Aip06g01281 483 MobiDBLite consensus disorder prediction 93 112 - -
Aip06g01281 483 SMART rav1_2 371 414 IPR001471 GO:0003700|GO:0006355
Aip06g01281 483 SMART rav1_2 319 357 IPR001471 GO:0003700|GO:0006355
Aip06g01281 483 MobiDBLite consensus disorder prediction 9 38 - -
Aip06g01281 483 MobiDBLite consensus disorder prediction 1 57 - -
Aip06g01281 483 MobiDBLite consensus disorder prediction 152 174 - -
Aip06g01281 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 323 401 - -
Aip06g01281 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 323 401 - -
Aip06g01281 483 MobiDBLite consensus disorder prediction 152 182 - -
Aip06g01281 483 MobiDBLite consensus disorder prediction 92 112 - -
Aip06g01281 483 Gene3D AP2/ERF domain 318 353 IPR036955 GO:0003700|GO:0006355
Aip06g01281 483 SUPERFAMILY DNA-binding domain 324 353 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01281 Aip-Chr6 19360807 19368290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01281 321 402 AP2-EREBP Transcription Factor Family AT5G57390 74.490 2.13e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01281 K09285 - ahf:112756603 472.626