Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01267 ATGATGGTTCTGGATGCATTGAATTCTGGTCCTACTGCAGAAGCCATTTCTCAAATTATAGATACCATCGCTGAGTTTCTATATTATGCTAGTGATGTTCTTGTGAAGAAGGATAGTTTTAAGGAACTTTCAGCTTACTTGGAAAAAATTTCACCCATTTTAAAAGCATTGAAGAAAGGAAAAGTCAGCGATTCTGAGAAATTCAACCATGCCATTGAGATTCTGAGTCGTGAAGTTAGAGATGCAAAGCAACTGGCTGAAGAATGCAGCAAGAAGAACAAGGTATATCTCCTAATGAACTGCAGAACCATTATCAAGCGCCTCCAAAATAGCACTAGTGAGATTAGCAGGGCAATTGGTCTTCTTCCTTTGGCCACACAAGGCCTTTCTAATGGAATAATTGAAGAAATTATAAAGCTATGTGAGAATATGCAGGCAGCTGAGTTTAAGGCAGCCATAGCAGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATACAGGAAAAGAATGTAGATCGCTCCTATGCAAATGCTTTGTTGGTTCTCATTGCAGATTCTGTTGGGATTACAAATGAGAAATCAACAATGAAGAAGGAACTTGAAGAGTTCAAGAGTGAAATCGAAAATGCCAGGCTAAGGAAGGACCTAGCTGAAGCCATACAAATGGATCAGATCATTGCTTTGTTAGAAAGAGCTGATGCAGCTTCATCCCCTAGGGAAAAGGAACGCAAGTACTTTGACAAACGCAGATCTTTGGGAAGCCAACCCTTGGAACCATTACAGTCTTTTTATTGCCCCATTACCCGGGATGTCATGGTTGATCCTGTGGAAACTTCATCAGGTCAAACATTTGAGAGAAGTGCAATTGAGAAGTGGTTTGCAGATGGAAACAAATTGTGTCCTCTAACCATGGTTCCTTTAGACACATCAGTTTTGAGACCCAACAAAACCTTGAAACAATCAATAGAAGAATGGAAAGATAGAAATACAATGATTACAATTGCTTCAATGACTGAAAAAATCCAATCAGGAGATGATGAGGAAGTACTGCATTGTTTACAGAAGCTTCATGACTTGTGCGAACAAAAGGGCCAGCACAGAGAATGGGTGCTACTGGAGAATTACATTCCAGTTCTTATCCGATTACTCGATGCTAAAAACCGTGATGTCAGGAATAATGCCCTTGTCATCCTTTGCTTGCTGGCAAAGGATAGTGAAGATGCTAAGGAAAGAATTGCTAAAGTTGATAATGCAATTGAGTCTATCGTGCATTCTCTTGGTCGTCGTTTGGGGGAAAGGAAGTTAGCAGTGGCATTACTTCTAGAACTATCCAAATATGATTTACTGAGAGAACGTATTGGAAAAGTTCAAGGTTGCATACTGTTATTGGTGACTATGTCCAGCAGTGATGACAATCAATCTGCTAGAGATGCAACAGAGTTGTTGGAAAAACTTTCATATTCTGACCAGAATGTTATACAGATGGCAAAAGCCAATTATTTCAAGCAGTTACTGCAGCGTCTCTCCACAGGGTCAGACGAGGTGAAGATGTTGATGGCCACGACTTTAGCGGAAATGGAGTTAACTGATCATAATAAGGAGTCCTTGTTTGAAAGTGGTATACTTGCTCCTCTTCTTCACTTGGTCTCACATAATGATGTTCAGATGAAAATAGTGGCCCTTAAAGCTCTTCAGAATCTATCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGACAAGGTGCAACACGTCCGCTACTTAACATTCTTTTCCAGCACAGCATTCCATCTTCAAGTTTGTGGGAACATGTAGCGCCAATAATTATGCAGCTTGCTGCATCGACGATGTCACAAGATGCACAGACACCAGTTTCATTGCTAGAATATGATGAGGATGTTTTTAACCTTTTCTCTCTAATTACTTATAACGTGCCTGATGTGCGGCAATACACTATCCAGACTTTTTATGCCCTGTGCCAATCGCCCTCAGCTTCTTATATTAGAACCAAGCTAAGAGAGTGCACAGCTGTCCAAGTACTGGTTAAGTTGTTTGAGACTGAAAACCAAAAACTACGAGGAAGTGCGGTAAAGCTTTTCTCTTGCCTTGTAGAAGGTTGTGATGAAGCCATCATACTAGAGAATGTGAACGAGAAGTGCATTGAGACTTTGGCCAGAATCCTGAAATCATCTTCTGATGAAGAAGAAATAGTTTCTACTATGGGAATAATTTGCAGTTTGCCGGAAAATCACCAGATCACTCAGTGGCTTTTGGATGCTGGTGCCTTGGTGACTATTTATAACTATATCCAAGAAGGGAAGGACAAAGATCTTCAAAGAAGCAAGCTGGTAGAGACTTCTGTTAGTGCCCTATGTCGATTTACAGTGCCAACAAACTTGGATTGGCAAAAGAGAGCAGCAGAGATTGGGATTATAACTATTCTAGTGCAGTTGCTTGAAAGTGGAACCATGTTAACAAAACAACGAGCAGCATTGTCTCTTGCTCAGTTTTCTAAAAGTTCACAGGGGCTGAGCAGGCCATTGCCGAAGCGCAAGGGACTCTGGTGCTTCTCATCCTCAGCGGCTGAAAGTGGATGCTTAGTACATGGGGGCCTGTGCACTGTCAAAACCTCATTTTGCCTTTTGGAGGCTGATGCAGTAGTACCACTAACAAAGGTTCTTGGGGAATCTGATCCGGGAGCTTGCGAAGCTTCTTTAGATGCTCTATTAACTTTAATTGAAGGTGAAAGACTACACAGTGGTAGTAGAGTGCTTGCAGATGCAAATGCCATACCACTTATAATCAGATTCCTTGGTTCCCCTTCTCCTGGATTGCAGGACAAGTCTCTGCATGCTCTGGAAAGGATTTTTAGGCTAGTGGAGTATAAACAACAGTATGGACCCTCAGCTCAAATGCCTCTAGTTGACTTGACTCAACGCGGTAATGGTAGCATAAGATCCATGGCAGCTAGAATATTAGCACATTTGAATGTCCTGCATGATCAATCTTCATATTTCTAA 3018 0.4119 MMVLDALNSGPTAEAISQIIDTIAEFLYYASDVLVKKDSFKELSAYLEKISPILKALKKGKVSDSEKFNHAIEILSREVRDAKQLAEECSKKNKVYLLMNCRTIIKRLQNSTSEISRAIGLLPLATQGLSNGIIEEIIKLCENMQAAEFKAAIAEEEILEKIESGIQEKNVDRSYANALLVLIADSVGITNEKSTMKKELEEFKSEIENARLRKDLAEAIQMDQIIALLERADAASSPREKERKYFDKRRSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFADGNKLCPLTMVPLDTSVLRPNKTLKQSIEEWKDRNTMITIASMTEKIQSGDDEEVLHCLQKLHDLCEQKGQHREWVLLENYIPVLIRLLDAKNRDVRNNALVILCLLAKDSEDAKERIAKVDNAIESIVHSLGRRLGERKLAVALLLELSKYDLLRERIGKVQGCILLLVTMSSSDDNQSARDATELLEKLSYSDQNVIQMAKANYFKQLLQRLSTGSDEVKMLMATTLAEMELTDHNKESLFESGILAPLLHLVSHNDVQMKIVALKALQNLSSLKKNGLEMIRQGATRPLLNILFQHSIPSSSLWEHVAPIIMQLAASTMSQDAQTPVSLLEYDEDVFNLFSLITYNVPDVRQYTIQTFYALCQSPSASYIRTKLRECTAVQVLVKLFETENQKLRGSAVKLFSCLVEGCDEAIILENVNEKCIETLARILKSSSDEEEIVSTMGIICSLPENHQITQWLLDAGALVTIYNYIQEGKDKDLQRSKLVETSVSALCRFTVPTNLDWQKRAAEIGIITILVQLLESGTMLTKQRAALSLAQFSKSSQGLSRPLPKRKGLWCFSSSAAESGCLVHGGLCTVKTSFCLLEADAVVPLTKVLGESDPGACEASLDALLTLIEGERLHSGSRVLADANAIPLIIRFLGSPSPGLQDKSLHALERIFRLVEYKQQYGPSAQMPLVDLTQRGNGSIRSMAARILAHLNVLHDQSSYF 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01267 1005 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Aip06g01267 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 326 IPR013083 -
Aip06g01267 1005 Coils Coil 193 220 - -
Aip06g01267 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1005 - -
Aip06g01267 1005 Coils Coil 72 92 - -
Aip06g01267 1005 SUPERFAMILY RING/U-box 251 331 - -
Aip06g01267 1005 SUPERFAMILY ARM repeat 16 408 IPR016024 -
Aip06g01267 1005 SMART arm_5 529 569 IPR000225 GO:0005515
Aip06g01267 1005 SMART arm_5 363 403 IPR000225 GO:0005515
Aip06g01267 1005 SMART arm_5 706 745 IPR000225 GO:0005515
Aip06g01267 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Aip06g01267 1005 SMART arm_5 405 445 IPR000225 GO:0005515
Aip06g01267 1005 SMART arm_5 664 704 IPR000225 GO:0005515
Aip06g01267 1005 Gene3D - 872 1003 IPR011989 -
Aip06g01267 1005 Gene3D - 12 127 IPR036537 GO:0007166
Aip06g01267 1005 CDD RING-Ubox_PUB 263 304 IPR045210 -
Aip06g01267 1005 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Aip06g01267 1005 Gene3D - 621 850 IPR011989 -
Aip06g01267 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1005 - -
Aip06g01267 1005 Gene3D - 327 430 IPR011989 -
Aip06g01267 1005 SUPERFAMILY ARM repeat 333 1001 IPR016024 -
Aip06g01267 1005 Gene3D - 431 620 IPR011989 -
Aip06g01267 1005 Pfam Armadillo/beta-catenin-like repeat 530 569 IPR000225 GO:0005515
Aip06g01267 1005 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01267 Aip-Chr6 19008555 19014145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01267 246 1005 U-box Gene Family AT1G76390 28.415 5.07e-65 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01267 - - gmx:100799969 1461.05