Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01266 ATGACATGCACAATATCAGAATCTCAATTTTGGATTTTAATCTTTAATTGCAATCATCATTTTCTTCATCATTCAACGCCTCTACACTACAGCATCATCTGCATCAGCTCTCACATATATGCAGGGTTTGCTTTTGTCTATTTTGAGGATGAGCGAGATGCTGAAGATGCAGTTCGTGCTCTTGACAACTTTCCATTTGGTTATGAGAAGCGAAGGCTGTCTGTAGAGTGGGCTAGGGGTGAACGTGGTCGCCATCGTGATGGCTCAAGGTCAAACCAGAGGCCCACAAAAACACTATTTGTGATTAATTTTGATCCAATTCGCACCCGAGTTCGTGACATAGAAAGACATTTTGAACCTTATGGGAAGGTTCTTCATGTTCGCATTCGTCGTAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGCAAGATATTGGATAGAGTAGTGTCTGTTGAGTATGCTCTGAGGGATGATGATGAAAAGGGTGACAGATATTATGACAGTCCTAGAAGAGGAGCTTATGGGAGATCACCCAGTCCAGGTTATAGGAGGAGACCAAGCCCTGACTATGGCCGTCCACGCAGTCCTGTATATGATAGGTACAATGGTCCAGCCTATGATAGGCGTAGGAGCCCTGAATATGATAGGCCTCGGAGCCCTGACTATGGTAGGAACAGGAGTCCTGAATATGGGAGACATCGCAGTCGAACACCAATTCGAAGATCCAGAACTTAG 771 0.4397 MTCTISESQFWILIFNCNHHFLHHSTPLHYSIICISSHIYAGFAFVYFEDERDAEDAVRALDNFPFGYEKRRLSVEWARGERGRHRDGSRSNQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDEKGDRYYDSPRRGAYGRSPSPGYRRRPSPDYGRPRSPVYDRYNGPAYDRRRSPEYDRPRSPDYGRNRSPEYGRHRSRTPIRRSRT 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01266 256 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 39 210 IPR029537 GO:0000398|GO:0005681
Aip06g01266 256 MobiDBLite consensus disorder prediction 215 247 - -
Aip06g01266 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 66 IPR000504 GO:0003723
Aip06g01266 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 161 IPR000504 GO:0003723
Aip06g01266 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 80 IPR000504 GO:0003723
Aip06g01266 256 CDD RRM2_AtRSp31_like 98 167 - -
Aip06g01266 256 SMART rrm1_1 98 164 IPR000504 GO:0003723
Aip06g01266 256 MobiDBLite consensus disorder prediction 172 256 - -
Aip06g01266 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 168 IPR000504 GO:0003723
Aip06g01266 256 SUPERFAMILY RNA-binding domain, RBD 39 172 IPR035979 GO:0003676
Aip06g01266 256 Gene3D - 36 91 IPR012677 -
Aip06g01266 256 Gene3D - 92 177 IPR012677 -
Aip06g01266 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 39 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01266 Aip-Chr6 18994658 18997487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01266 42 173 Eukaryotic Initiation Factors Gene Family AT1G49760 26.712 1.03e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01266 K12893 - gmx:100797709 340.117