Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01253 ATGGCGAATCTGGAGTGCAATCTGAGGGGACCTCCCACTCCTACAGCTCAAACAGTTTGGATAGGTGAGGGAGATGAAGATCTCTACACAGAGCTATGGAAGCTGTGTGCAGGGCCTCTCGTCGATGTTCCCCGCACTGGGGAGAGAGTCTACTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAGGTGAACCAAGAACTGAGTCAGCAAATCCCTCATTTCAATCTCCCAACCAAGATTCTCTGCCGTGTTGTTCACATTCAGTTGCTGGCGGAACAGGAAACTGATGAAGTTTATGCCCGTATCACTTTGCTTCCAGAACCAGATCAAAAAGAGCCTACAATCCCTGATCCAAGTCCCGTGGAATCTCAAAGAGAAACGTTTCACTCTTTTAGCAAGATATTAACTCCCTCTGATACTAGCACACATGGAGGATGTTCAATTCGGCGTATGCATGCCACAGAGTGCCTACCTCCATTGCCATCACCTCCATCGGACGCGGATGAAAATTCCCCACCACCATCCCAGGAGTTGGTGGCGAAGGATCTTCATGGGTTCGAGTGGAAGTTTAAGCATGTATTAAGAGGTAAAGGAGATAAAGGAGGTAAAGGGGGTAAAGGAGGTTCACCAAAGAGGCACTTGTTCACAACTGGCTGGAGTACCTTTGTCACTTCCAAAAGACTGGTTGCTGGAGATGCTTTTGTGTTTTTAAGGGGAGAAGATGGGGAAATGAGAGTTGGGATTAGGCGACTTGCGCGGCAGCAGATCCCAATGCCTTCGTCCGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTATGACTCGCACCATGTTTGTGGTTTATTATAAACCAAGGAGTAGCCAGTTTATTATTGGCCTTAACAAATATCTGGAAGCAGTCAAAAATAAATTTACTGCTGGAATGCGTTACAAGATGAGGTTTGAAGTGGAAGAATCACCTGAGAGAAGATTTTCTGGTACTATTGTTGGGGTTGGGGATGTATCGCCAGGATGGTCAAACTCTCAATGGCGTTCCTTGAAGGTTCATTGGGATGAGCCGGCAACGTTTCCGAGACCAGAGAGGGTTTCTGCTTGGGAGATAGAGCCTTTTGTTGTCTCTACTGCGTTGGCCAAAAGGCCCAGGCATGCTGATCATACTTCATCGTCTGAATTAGGTGGTGCTGAAGTCCAATGCAAGGAAAACCAGGTTGTATGGTCCTTGAGGCAGAAAGAAACCAATGGCAATCCCATGAATAGCCACTCCAGTAGCTCTCGGGTTCGTATGGAAGGAATATGGTCTAATTCACCACATGCGAGTGTCCCACCAAACCCCCCAAACAACAATGCTGCTGCAAAACAAGGCCTTTCACCTATTTCATCCAAACCAAATGATGATGGTTTGACTCATGATAAAGTTGAAGTAGATGCTAGAAAGAAGACTGAGAATCCCACAAAGATCTTTTTATTTGGAGTTAATTTGACTAACAACTTCCGTAGTAATGTGTCCCATCCGGAGAAAGAACAGGCTTGCTCTGCCATTGTTCCCGTTGGTCCCAAAGAATCTACTCCCATTACCATTACTGCATCAGCCACTCAGAATGCTCAGAATTCCAACTATTCAGTGTCCGATAAGGAGCAACAGAACCAAATTTCTTCTGATGTATTGCCAGCAGAGAAGCCTAACAAGCTGGCATCCTTACCATCCATGAGGACTCGAACTAAGGTTCAAATGCAAGGTGTAGCTGTAGGGAGAGCTGTGGACCTAACCATGTTGAATGGCTATGACGAGCTTACAATTGAGCTTGAGAAACTGTTTCATATTGAGGGAGAACTCAGATCACAAAACAAATGGGCAGTTACTTTTACTGATGATGAAAATGACATGATGCTTGTTGGTGATGATCCATGGCCGGAGTTCTGCAACATTGTGAAACGGATTTACATTTATTCAAGGGAGGATGTGAAGAAGATGAAGTATAAACTCTCCGTGCCTTCGTTGGACTGCGAAGAGACTTTGTTGTCGAAAGAAGAGACTTAA 2079 0.4565 MANLECNLRGPPTPTAQTVWIGEGDEDLYTELWKLCAGPLVDVPRTGERVYYFPQGHMEQLQASTNQEVNQELSQQIPHFNLPTKILCRVVHIQLLAEQETDEVYARITLLPEPDQKEPTIPDPSPVESQRETFHSFSKILTPSDTSTHGGCSIRRMHATECLPPLPSPPSDADENSPPPSQELVAKDLHGFEWKFKHVLRGKGDKGGKGGKGGSPKRHLFTTGWSTFVTSKRLVAGDAFVFLRGEDGEMRVGIRRLARQQIPMPSSVISSQSMHLGVLATASHAVMTRTMFVVYYKPRSSQFIIGLNKYLEAVKNKFTAGMRYKMRFEVEESPERRFSGTIVGVGDVSPGWSNSQWRSLKVHWDEPATFPRPERVSAWEIEPFVVSTALAKRPRHADHTSSSELGGAEVQCKENQVVWSLRQKETNGNPMNSHSSSSRVRMEGIWSNSPHASVPPNPPNNNAAAKQGLSPISSKPNDDGLTHDKVEVDARKKTENPTKIFLFGVNLTNNFRSNVSHPEKEQACSAIVPVGPKESTPITITASATQNAQNSNYSVSDKEQQNQISSDVLPAEKPNKLASLPSMRTRTKVQMQGVAVGRAVDLTMLNGYDELTIELEKLFHIEGELRSQNKWAVTFTDDENDMMLVGDDPWPEFCNIVKRIYIYSREDVKKMKYKLSVPSLDCEETLLSKEET 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01253 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 399 677 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip06g01253 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 391 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip06g01253 692 SUPERFAMILY CAD & PB1 domains 579 660 - -
Aip06g01253 692 Gene3D - 580 672 - -
Aip06g01253 692 MobiDBLite consensus disorder prediction 458 477 - -
Aip06g01253 692 Pfam AUX/IAA family 551 666 IPR033389 -
Aip06g01253 692 SMART B3_2 137 258 IPR003340 GO:0003677
Aip06g01253 692 Gene3D - 317 389 - -
Aip06g01253 692 Pfam B3 DNA binding domain 137 256 IPR003340 GO:0003677
Aip06g01253 692 ProSiteProfiles B3 DNA-binding domain profile. 137 258 IPR003340 GO:0003677
Aip06g01253 692 SUPERFAMILY DNA-binding pseudobarrel domain 128 285 IPR015300 -
Aip06g01253 692 MobiDBLite consensus disorder prediction 446 482 - -
Aip06g01253 692 MobiDBLite consensus disorder prediction 422 441 - -
Aip06g01253 692 Pfam Auxin response factor 282 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip06g01253 692 PANTHER AUXIN RESPONSE FACTOR 11 15 391 - -
Aip06g01253 692 PANTHER AUXIN RESPONSE FACTOR 11 399 677 - -
Aip06g01253 692 ProSiteProfiles PB1 domain profile. 584 667 IPR000270 GO:0005515
Aip06g01253 692 Gene3D - 134 257 IPR015300 -
Aip06g01253 692 CDD B3_DNA 135 256 IPR003340 GO:0003677
Aip06g01253 692 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01253 Aip-Chr6 18740779 18745217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01253 24 671 B3 DNA Binding Superfamily AT4G23980 51.570 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip06g01253 AUX_IAA 1.1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01253 K14486 - gmx:100820503 818.92