Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01250 ATGTTGGTTCAGAAATCATGCTTGCCCTACGTCACTCTCAAAAATCACGGTCTTTACTCTCAAACCCTCTCCTCTCACGGACTCACGGTCTCACCATTTACCACCGTCGACTGCCACCGCCACCTCCTATCCTCTCAGTCCCTCACCGCTGCCTCTTACGGACTCTCGACGTCACCGTCACCGCTCATCACCGTAGCAGAGAGTGCATCCTTGAGCCCTCGCTGTCTTCCAGTGTTTGCCATCTTTGCCGTCTTCGAGTTGGAGTGTCGGAGCGTCGGAGCATCTTCTCATCGTCACGTCTTTGCCGGTCTTCGTGTCTTCGCTGGTCTTTGCGTCGGAGTCTCTGCGCCTCTTTTCTGTCTTCGCCGATCTTTACCATCAGCTGCTCTTCCGTCTGtagctcctccggccaccctccgccagggctgctcacttccatTCTCCTCTAAAGTGTACGTCAAGTCACCTGTATCGTGTTTCGTTGTCTCAAATGAAATCGCTCCTTCTGTCTCCGCCATTATTGGAAGAGCTGCCATTGCTGCTCCCTCTGTTGTCAGAGTTGTGTCCCTCTTCCGTCGTTTAGGTAGTTCCACCTCTGCCTCTGGTTCCTCTGCTACGGCTGCTTCAGTTGTCGCCTGCATCCCCTTCATTCTATTTCTTCCGCTTCTGGTTACCCTGCTCAGCTCCTCTGTCTGTGTTTTTGCTAAGGACAAACGCCTCAGGGTGAAGGGACCCGTGAGGATGCCCACTAAGGTTCTTCACATCACTACCAAGAAATCTCCTTGTAGTGAAGTGAATAGACCTTCTGGCGTGCCGCCTTGCTTCTCTTCAATGGCTTCTAGGGCAAGCTCTTCAGCTGTCTTGTCTCCAGGTTCAAGATTGTGTCAATGTGGTGAAGAGAAGGTTTTACTTGTATGGAAAAAAGATAAAAACCTTGGGAGATAG 945 0.4889 MLVQKSCLPYVTLKNHGLYSQTLSSHGLTVSPFTTVDCHRHLLSSQSLTAASYGLSTSPSPLITVAESASLSPRCLPVFAIFAVFELECRSVGASSHRHVFAGLRVFAGLCVGVSAPLFCLRRSLPSAALPSVAPPATLRQGCSLPFSSKVYVKSPVSCFVVSNEIAPSVSAIIGRAAIAAPSVVRVVSLFRRLGSSTSASGSSATAASVVACIPFILFLPLLVTLLSSSVCVFAKDKRLRVKGPVRMPTKVLHITTKKSPCSEVNRPSGVPPCFSSMASRASSSAVLSPGSRLCQCGEEKVLLVWKKDKNLGR 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01250 314 PANTHER 40S RIBOSOMAL PROTEIN S20 227 266 - -
Aip06g01250 314 SUPERFAMILY Ribosomal protein S10 227 263 IPR036838 -
Aip06g01250 314 Gene3D Ribosomal protein S10 domain 223 267 IPR036838 -
Aip06g01250 314 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 227 266 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aip06g01250 314 Pfam Ribosomal protein S10p/S20e 224 264 IPR027486 -
Aip06g01250 314 ProSitePatterns Ribosomal protein S10 signature. 235 250 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01250 Aip-Chr6 18627554 18633807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01250 235 264 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 86.667 3.07e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01250 K02969 - aip:110263231 78.5666