Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01249 ATGGAACAGCATCATCTGCCACCGCCCACCAATAACACCCGTGGTGGCACGCGCCACCCTCTCTACCGCGGCGTCAGGAAGCGCCGCTGGGGCAAGTGGGTTTCCGAGATTCGAGAGCCTCGCAAGAAATCCCGCATATGGCTCGGTTCCTTCCCTGTCCCCGAAATGGCTGCCAAGGCATACGACGTCGCAGCCTACTGCCTTAAAGGCCGTAAGGCGCAGCTCAACTTCCCCGACCAGGTCCACCTCCTCCCGCCGCTCCCCTCCACCTGCTCCGCCAGGGACATCCAGGTCGCCGCCGCCAAGGCCGCCAACTCCGTGAAGGATTCTGTCGCTTCCACCCGCGGTGGTGCCGATGATGAGGATGATTTCTGGGGCGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTGTGGTTGCTGGAGCTCTCCGAGTGGGTCGTCGTGGACTACTTCCTCCGGCGACATCACGGCGTGGCCGGAGGTGGAGCAACCCTTCACGGCGTGTCTATGA 513 0.6316 MEQHHLPPPTNNTRGGTRHPLYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFPDQVHLLPPLPSTCSARDIQVAAAKAANSVKDSVASTRGGADDEDDFWGEIELPELMDGECGCWSSPSGSSWTTSSGDITAWPEVEQPFTACL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01249 170 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Aip06g01249 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 170 - -
Aip06g01249 170 MobiDBLite consensus disorder prediction 1 20 - -
Aip06g01249 170 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Aip06g01249 170 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Aip06g01249 170 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Aip06g01249 170 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Aip06g01249 170 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Aip06g01249 170 CDD AP2 20 80 IPR001471 GO:0003700|GO:0006355
Aip06g01249 170 MobiDBLite consensus disorder prediction 1 17 - -
Aip06g01249 170 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 170 - -
Aip06g01249 170 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01249 Aip-Chr6 18621101 18621613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01249 17 170 AP2-EREBP Transcription Factor Family AT1G01250 62.874 4.94e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip06g01249 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01249 K09286 - gmx:100819971 219.935