Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01244 ATGGAGGTGGGGATGGGGCGCGTGGTGTGGGACGACGACGATAAAGCCACGGTAGCGGCGGTTTTGGGAGCACGCGCTTTGGATTTCTTGGTGACAAACGCGGTATCCAATGAGAACCTGTTAGTGGCAGTTGGGAGCGACGAGACTCTCCAGAACAAGCTTTCCGATCTGGTGGACCGTCCCAACCTCTCGAATTTCAGTTGGAACTACGCCATTTTCTGGCAGTTATCTCAGTCCAAATCCGGCGACTGGGTTCTCGGATGGGGCGACGGTTCCTGCAGGGAGCCCAACGATGCCGAAGAAGGCGGCGGAGGTGGTGTTAGGGGAGGGATTCTGAGTCTCCGAATCGACGACGAGATGCAGCAGAGGATGAGGAAGAGGGTCTTGCAGAAGCTACACACTACGTTCGGTGGCTCCGACGAGGACAATTACGCTTTTGGCCTCGACCGCGTGACGGACACGGAGATGTTCTTTCTTGCTTCCATGTACTTCTCGTTTCCCCGCGGCCACGGTGGCCCAGGTAAGTGCTTTGCGTCCGGGAAGCACCTGTGGCTCTCGGACGCCATGAAATCCAACTCTGAATACTGCGTGCGCTCTTTCTTGGCTAAAAACGCTGGCTTTCAGACTATTATTTTGGTTCCTACCGATTTGGGAGTGTTGGAGTTGGGTTCAGTGAGGACTCTGCCGGAGAATTTTGAGCTCTTGCAGGCCATCAAATCGGTGTTTTCGTCTCAGGCTACAACCACCTACCCCATGGCTAATAGTAAGCCTCTTATGCCATTGACGGTGATGAGTGAAAAGAGGGATGAGAATAATAGTGCTCTTTTTCCTGGTTTGGTAATCGGGGACCATACTCACCAGAACAATAACAAGGTTGTTGAGGGAGTGCCAAAGGTTTTTGGAAGCGCTGTGAATTCTGGTAGGTCCCATTTCAGGGAGAAGCTTGCTGTTAGGAAGATGGAGGAGAGGCCTTGGGTACCCCACCACCAACCCAATGGGAATAATAATGCCAATGCCAATGCCATTAACTTCCCCAATGGTCCTCCTCGCAATGGTCTTCATCACGGGTCTGCTTGGGTTGGTGGAGCAGCAGCAGTAGGAGGAGGGAATAATAATAATAGTAACTGTAATAATCATACTCAAGGTGGTGTGAGGCAGGCTGCTGCTGGTGGCGCTGCTGAGATTTTCGCTCCTAGGTCGTCAGCGAGCAATGTGTCTGCCGAGTTGGCCAATGGTGGTGTGAGGCCGCAGGATTTTAGGATTAGCAGCTATCAACCCCAAAGGCAGGTGCAAATGCAGATTGATTTCTCCGGAGCCACTTCCAGACCTTCTGTGAGGCCTGTGGTTGCTGAGTCGGAGCTTTCTGATGTTGAGGCCTCGTGCAAGGAGGAGCAGCCAAGCATGGCTGACGAAAGAAGGCCCAGGAAGCGGGGAAGGAAGCCTGCTAATGGTAGGGAGGAACCCCTCAATCACGTGGAAGCTGAGAGGCAGAGGCGCGAGAAGCTCAACCAGAGGTTCTATGCGCTGCGGTCTGTGGTGCCCAATATATCCAAGATGGACAAGGCGTCATTGCTTGGTGATGCCATTGCCTACATCAATGAGCTCCAAGCAAAGCTCAAGATGATGGAATCTGAGAGGGAGAGACATGGAGGAAGCACATCTTTTAGGGAGCCGGAGGCAATGCAAAGAGCGTCAGAAAATCACCATGGTGGTGGAAATGCTGATGTGGATATTGAAGCAGCACAGGATGAGGTGATTGTTAGGGTGAGTTGCCCTCTTGATTCTCATCCGGTTTCAAGAGTGATCCAAACATTCAAAGAGGCACAAATCAATGTTATTGATTCAAAACTCGCAGCTGCAAATGACACCATATTTCACACCTTTGTAATTAAGTCCCAACAAGGATGTGAACAGCTCACAAAGGACATGTTGATTGCAGCACTCTCCCCAGAATCCAATTCTTTACAGCAATTGTCATCTGTTGGTGGGTAG 1992 0.5141 MEVGMGRVVWDDDDKATVAAVLGARALDFLVTNAVSNENLLVAVGSDETLQNKLSDLVDRPNLSNFSWNYAIFWQLSQSKSGDWVLGWGDGSCREPNDAEEGGGGGVRGGILSLRIDDEMQQRMRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLSDAMKSNSEYCVRSFLAKNAGFQTIILVPTDLGVLELGSVRTLPENFELLQAIKSVFSSQATTTYPMANSKPLMPLTVMSEKRDENNSALFPGLVIGDHTHQNNNKVVEGVPKVFGSAVNSGRSHFREKLAVRKMEERPWVPHHQPNGNNNANANAINFPNGPPRNGLHHGSAWVGGAAAVGGGNNNNSNCNNHTQGGVRQAAAGGAAEIFAPRSSASNVSAELANGGVRPQDFRISSYQPQRQVQMQIDFSGATSRPSVRPVVAESELSDVEASCKEEQPSMADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKMMESERERHGGSTSFREPEAMQRASENHHGGGNADVDIEAAQDEVIVRVSCPLDSHPVSRVIQTFKEAQINVIDSKLAAANDTIFHTFVIKSQQGCEQLTKDMLIAALSPESNSLQQLSSVGG 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01244 663 Pfam Helix-loop-helix DNA-binding domain 490 536 IPR011598 GO:0046983
Aip06g01244 663 Coils Coil 532 552 - -
Aip06g01244 663 MobiDBLite consensus disorder prediction 451 497 - -
Aip06g01244 663 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 489 551 IPR036638 GO:0046983
Aip06g01244 663 Gene3D - 479 549 IPR036638 GO:0046983
Aip06g01244 663 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 486 535 IPR011598 GO:0046983
Aip06g01244 663 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 50 242 IPR025610 -
Aip06g01244 663 CDD bHLH_AtAIB_like 483 548 - -
Aip06g01244 663 PANTHER MYC 6 653 IPR045084 GO:0003700|GO:0006355
Aip06g01244 663 MobiDBLite consensus disorder prediction 456 497 - -
Aip06g01244 663 MobiDBLite consensus disorder prediction 543 574 - -
Aip06g01244 663 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 6 653 - -
Aip06g01244 663 SMART finulus 492 541 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01244 Aip-Chr6 18481870 18483861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01244 3 662 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.025 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g01244 bHLH-MYC_N 3.7e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01244 - - adu:107491937 1229.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01244 06 18481870 18483861 Aip02g00347 02 4630700 4633074 PCT