Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01242 ATGGATTTGGAACCAGAAACTCGACGGAAAATCGAGGACATGGTGATGGATTTACTCAAGCAATCCAACATAGAAGAGACTACTGAGTTCAGCATCCGAGTCGCCGCCTCCGAGCGACTCGGCATCGATCTCTCCGACCCCAACCGCAAGCAGTTCGTCAGAAACGTCGTCGAGTCTTATCTTCGAACCGTCGCTGCCGAAGACGCCACCGTTGCAGCCGAACAGAAACCGCCGGAACTGATCGCTCCTCCGGAGGAGCCCATAGAAGCGGCGTTGCAGTTGCCGAAGCTAAGTACGGAGGTTAAGGATGACTGCGACCAAGTCATTTTCCAGCTGTCAAACAAAAGGAATGTGGTGGTTAAAAAGTTCAAAGGGACAACATTGGTATCAATTAGAGAGTTTTTCCAGAAAGATGGAAAACAGATTCCCACTTCCAAAGGGATAAGTTTATCATCTGAACAATGGTCAACCTTCAAAAAGAATGTGCCAGCTATTGAGGAAGCTATTACAAAGTTGGAAGGAAAGATGAAATCTGAGCTTCATGGTAAGCAAAATGGAGATGCCTATAATTCAGTTGTTGATGTGGCTCCTCCTCTTGAGCATGTCCCTGTTGAGGTCAGCCGTTTTGATGGGAAAAATTATCAATTATGGGCTCAGCAGATGGAATCACTTTTGAAACAGTTAAAGATTGATTATGTGCTTGCTGAACTAAGCCCAAATGCTGTGCTTGGTGAAAATTCTAGTGCTGAAGAAATTGCTAGAACCAAGAATGCAGAAAGGAGATGGGTGAATGATGATTTAATGTGCCGTCGCAATATCTTGACTCATTTATCTGATAGTCTATTTTGTCTCTATGCAAACAGAAAAATGAGTGCTAAGGAGTTATGGGAAGATTTAAAATTGGTTTATCTGTACGAGGAACATGGAAGCAAGAGAGCGCAGGTGAAAAAGTATCTTGAGTTTCAGATGGTTGATGAGAGAGCAATTGTTGAGCAAATCCAAGAATTTAATAGCATTGCAGATTCACTCGTTGCTGCTGGAATGTTTCTCGATGAAAACTTTCATGCGAGTGCCATCATTTCAAAGCTCCCACCATCCTGGAAGGACTTCTGCATCAAGTCAATGCGCGAGGAGTATCTCCCTTTATGGAGGCTAATTGATTGTATAAGGATGGAGGAAGAATCTCGCAACGGATTCAAACGAGTTGGTGAACCCTATAGTAGGATAGGATTTAACCATTCCAATAAAGGTGGACCAAGGGAAAGTGACAATAAGTTCCCAGGTATGCATAGGAATAAGTCAGAGAGTAATGGCAAGAGCATAGCCTGTTATATTTGTGGCAAGAAGGGGCATCTTTCTAAACACTGCTGGAGAAGATATGACAAACAAGGTAATGAAAGAAAGGCCGAAGATGTATGTATACCTCAAGAAGTTAACATGGTGGGGGGTTGTTAG 1455 0.433 MDLEPETRRKIEDMVMDLLKQSNIEETTEFSIRVAASERLGIDLSDPNRKQFVRNVVESYLRTVAAEDATVAAEQKPPELIAPPEEPIEAALQLPKLSTEVKDDCDQVIFQLSNKRNVVVKKFKGTTLVSIREFFQKDGKQIPTSKGISLSSEQWSTFKKNVPAIEEAITKLEGKMKSELHGKQNGDAYNSVVDVAPPLEHVPVEVSRFDGKNYQLWAQQMESLLKQLKIDYVLAELSPNAVLGENSSAEEIARTKNAERRWVNDDLMCRRNILTHLSDSLFCLYANRKMSAKELWEDLKLVYLYEEHGSKRAQVKKYLEFQMVDERAIVEQIQEFNSIADSLVAAGMFLDENFHASAIISKLPPSWKDFCIKSMREEYLPLWRLIDCIRMEEESRNGFKRVGEPYSRIGFNHSNKGGPRESDNKFPGMHRNKSESNGKSIACYICGKKGHLSKHCWRRYDKQGNERKAEDVCIPQEVNMVGGC 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01242 484 PANTHER PBF68 PROTEIN 4 475 - -
Aip06g01242 484 MobiDBLite consensus disorder prediction 410 436 - -
Aip06g01242 484 PANTHER PBF68 PROTEIN 4 475 - -
Aip06g01242 484 Pfam Transcriptional Coactivator p15 (PC4) 110 161 IPR003173 GO:0003677|GO:0006355
Aip06g01242 484 MobiDBLite consensus disorder prediction 418 432 - -
Aip06g01242 484 ProSiteProfiles Zinc finger CCHC-type profile. 443 456 IPR001878 GO:0003676|GO:0008270
Aip06g01242 484 Gene3D - 434 481 - -
Aip06g01242 484 SUPERFAMILY Retrovirus zinc finger-like domains 428 464 IPR036875 GO:0003676|GO:0008270
Aip06g01242 484 SUPERFAMILY ssDNA-binding transcriptional regulator domain 109 171 IPR009044 GO:0003677|GO:0006355
Aip06g01242 484 SMART c2hcfinal6 442 458 IPR001878 GO:0003676|GO:0008270
Aip06g01242 484 Pfam DEK C terminal domain 7 61 IPR014876 -
Aip06g01242 484 Pfam gag-polypeptide of LTR copia-type 262 397 - -
Aip06g01242 484 Gene3D Transcriptional Coactivator Pc4; Chain A 100 177 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01242 Aip-Chr6 18456821 18461011 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Aip06g01242 Retrotran_gag_2 7e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01242 - - gmx:100800963 570.081