Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01241 ATGACGGAGTCACCGTCGGATAGGCGGTGTAAGCGCAACGCCGGCCCAAATTGCCGGTGCAGCGGGGTGGCGTCGCTGGGAAAATCGTTCTGCGAGAAACACTTGCAGCAGCGTGCGCTTCAAGACCAGAAACGCAGAATTAAGAGGAACGAAGGGAACGAATCGGAGCGCAGGTCCAACAAGACCAAGAGGAGGCTATCGACCGCCGATGACGTCAGTGCCGGATCCGAATTGGAAGTTTCCGTGTCCGAATTGATTGAAAACTCCGTCAGAAAGAAAAAAAAGAACGTGACGAAGAAGAAGAAACTGCTTGATCAAGAGAGTGTAAATGAGTGTGGTATTCACGAGGACTCTGACAGGGGAATTGAAGATAAGAAACAAATGGGTAGCAAAAGCAAGGAGGGTGGAAGTTTGATGTGTCATCAGTGCCAGAGGAATGATAAGAGTGGAGTTGTCTTTTGCTCAAAGTGCAACAGAAAACGCTACTGTTATGAATGCCTTGAGAGGTGGTACCCAGGTAAAACCCAGAAGGAAGTTGAGAATGCATGTCCATTCTGTTCAGGCAATTGCAATTGCAAAGCCTGCTTGCGGGAGGTTCCAGTGCTTATGGACCGAGAGGTAAATTCCAGTGTCAAATTACATCGACTGCGCTACTTACTCTATAAAGCCTTGCCTGTTCTGAGGCATATTCACAGGGAGCAAAGCTTAGAACTAGAGATTGAATCTAAAATAAGAGGTGAGCAACTGCAAGAAAAAGGCATAGCAAGAACAGAGCTAGACAAACGTGAGCGCTTATACTGTGACAATTGCAATACGTCTATAATTGGGTTTTACCGGAGCTGCCCCAATCCCAGTTGCTCTTATGATCTATGTCTCATGTGTTGTCAAGAGCTTAGGGAGGGTTGCCAACCTGGAGGCATAGAAGCTGAAACATCCCAGGAACAATTTTCTGAGAGAGCTCATAATCATGATTCATCAAGAACTAAGAGTAAAAAACAAAATAAAAGATATGGATGGGAGAGCCAGCTTGTGCCTACGAATTTTGATTTTCAAGCTGACATGTCCACCCCCTTCCCTGAATGGAACGCTAATACAGATGGTAACATTCCATGTCCACCAAAACAGCGTGGAGGATGTGGTACCACATTGCTAGAATTGAGACGTACTTTCAAATGTAACTGGGTAGTGAAATTGCTAAATAATGCTGAGGACCTCACCAGAGACTACACACCGCCTGATGTTGATATTACTGAAAAGTGCTCTTTATGTCAGAAAAATACTATTGAAGGAAAAACCAATCTTGAAGCCCGTAGGGCAGCATTCAGAGATGATGATAATGATAATTTCATATATAGCTCAAATGCCCGTGATATTTCTGATGATGAAATTGAGCATTTCCAGAGGCACTGGATGAGGGGAGAACCTGTTGTTGTGAGAAACATTCTAGATAAGACATCGGGTCTTAGCTGGGAGCCAATGGTTATGTGGAGGGCTTTAAGAGAAACAGGCTCCAAAGTGAGGTTTAAAGACGAAACTCGAAGTGTAGAAGCTATTGATTGCTTTGATTGGTGTGGGGTTGAGATCAATATTCACCAATTTTTCCAAGGCTACCTAGAAGGTCGAATGTATAAAAATGGGTGGCCAGAAATGCTGAAATTGAAAGATTGGCCCACATCCACCACTTTTGAAGAGCGCTTGCCTAGGCATGGCACGGAGTTCCTCATGGCACTCCCCTACAGGGATTACACTAATCCAAAATCTGGGACTTTGAATTTTGCCTCTAAACTTCCTGATGACTCACTAAAGCCGGATTTAGGACCCAAAACATATATTGCTTATGGATTTTCTGATGAGCTTGGTAGAGGAGATTCTGTGACAAAGCTGCACTGTGATGTGTCTGATGCAGTCAATGTGTTGATGCATACAACCAAAGTGAAGATAGATCCTTGTCGGAGAAAAATAATAAAAGAATTGCAGAAAAAATATGCCGAAGAAGACTCTCGTGAACTTTTATGTGAAGCTTTAGGAGATGCTGATGAAAGACCTAAATCTGAAGCATTGAGCCATGATCCGAAGGCAGACATTGGAATTGGTAATATTTCACCAACTAGCCACGTGGATCAGTGCATTCCATCTATATGTGAAGAAGGCAAGAGTCAGAAGTTAGAAACACATGATCTATCTGCAAGTAGCTTAGCTAATAATATGAGCAATAAGGAAGACAGAATGAGGATTGATTTTTTAGATGATAAGGAGCCTGCTGGTCCTGAGCTGAGAGAGTCAAAACAAGGCCTGGAGAAAGATACTTTGCAAACTGAAGATGGAGCTGAGGTTGCCCTCGGTGGTGCTGTTTGGGACATCTTCCGCCGGCAAGATGTCCCTAAGCTAATTGAGTACTTAAGAAAGCACAAGAATGAATTCCGTCATATAAAAAATCATCCTGTAGATTCTGTTATACATCCTATTCATGATCAAACTCTGTTTTTAAATGAGAGGCATAAGAAACAGCTGAAAAAGGAGTTCGATGTTGAACCATGGACCTTTGAGCAACACCTTGGGGAGGCTGTCTTCATTCCAGCAGGATGTCCTCACCAAGTGAGAAACAGACAAGAAATGGAGCCATGGCCGACGGAATCCATTTGA 2643 0.4355 MTESPSDRRCKRNAGPNCRCSGVASLGKSFCEKHLQQRALQDQKRRIKRNEGNESERRSNKTKRRLSTADDVSAGSELEVSVSELIENSVRKKKKNVTKKKKLLDQESVNECGIHEDSDRGIEDKKQMGSKSKEGGSLMCHQCQRNDKSGVVFCSKCNRKRYCYECLERWYPGKTQKEVENACPFCSGNCNCKACLREVPVLMDREVNSSVKLHRLRYLLYKALPVLRHIHREQSLELEIESKIRGEQLQEKGIARTELDKRERLYCDNCNTSIIGFYRSCPNPSCSYDLCLMCCQELREGCQPGGIEAETSQEQFSERAHNHDSSRTKSKKQNKRYGWESQLVPTNFDFQADMSTPFPEWNANTDGNIPCPPKQRGGCGTTLLELRRTFKCNWVVKLLNNAEDLTRDYTPPDVDITEKCSLCQKNTIEGKTNLEARRAAFRDDDNDNFIYSSNARDISDDEIEHFQRHWMRGEPVVVRNILDKTSGLSWEPMVMWRALRETGSKVRFKDETRSVEAIDCFDWCGVEINIHQFFQGYLEGRMYKNGWPEMLKLKDWPTSTTFEERLPRHGTEFLMALPYRDYTNPKSGTLNFASKLPDDSLKPDLGPKTYIAYGFSDELGRGDSVTKLHCDVSDAVNVLMHTTKVKIDPCRRKIIKELQKKYAEEDSRELLCEALGDADERPKSEALSHDPKADIGIGNISPTSHVDQCIPSICEEGKSQKLETHDLSASSLANNMSNKEDRMRIDFLDDKEPAGPELRESKQGLEKDTLQTEDGAEVALGGAVWDIFRRQDVPKLIEYLRKHKNEFRHIKNHPVDSVIHPIHDQTLFLNERHKKQLKKEFDVEPWTFEQHLGEAVFIPAGCPHQVRNRQEMEPWPTESI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01241 880 ProSiteProfiles WRC domain profile. 4 52 IPR014977 -
Aip06g01241 880 SUPERFAMILY Clavaminate synthase-like 462 869 - -
Aip06g01241 880 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 733 870 - -
Aip06g01241 880 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 18 735 - -
Aip06g01241 880 MobiDBLite consensus disorder prediction 38 70 - -
Aip06g01241 880 MobiDBLite consensus disorder prediction 681 700 - -
Aip06g01241 880 ProSiteProfiles JmjC domain profile. 585 880 IPR003347 -
Aip06g01241 880 ProSiteProfiles Zinc finger RING-type profile. 140 187 IPR001841 -
Aip06g01241 880 MobiDBLite consensus disorder prediction 38 73 - -
Aip06g01241 880 MobiDBLite consensus disorder prediction 313 336 - -
Aip06g01241 880 Gene3D Cupin 450 697 - -
Aip06g01241 880 Gene3D Cupin 699 872 - -
Aip06g01241 880 Pfam JmjC domain, hydroxylase 780 869 IPR003347 -
Aip06g01241 880 MobiDBLite consensus disorder prediction 314 336 - -
Aip06g01241 880 MobiDBLite consensus disorder prediction 750 769 - -
Aip06g01241 880 SMART cupin_9 566 874 IPR003347 -
Aip06g01241 880 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 733 870 IPR045109 GO:0032454|GO:0033169
Aip06g01241 880 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 735 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01241 Aip-Chr6 18423882 18430419 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aip06g01241 JmjC 4.6e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01241 K15601 - mnt:21406261 980.319