Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip06g01232 | ATGATAATAAAGCGCAATTTGAAAACCGGAATCCATACCCTCAAATGCTGTAGTAAGCTAGCAGAATCCAAGAAGCGCAAGCTCGATCAAGTTTACACTCAACCCACTCCAACGCCACCTGCTGAGCTCAATCATGATCCAGTGCGCTCACCCCCACGCCGCACTAGGATTCTTCCCTCCAGGTTCAGCGATTCTGTTCTTGACACCTGGACACATCACTGTGATTCGGACTACCACCACTGTCTCAATTCAGTTAAGACGGTTAAAACAAGCGTTAACGGAATCCGTTCTACTCTCCTCAAAACTGAGATTAACTGCAGAAAGAGGAAGGACGTGTACAAGCTCGACGAATTTGTGTTGGGTGACATAGTTTGGGCAAAATGCGGCAAGAGCTACCCGCCTTGGCCTGCTCTCGTTATTGATCCTCTCTTGCAAGCTCCCAAATCCGTCCTCAGCCGCTGCATTCCCGGCGCGATTTGCGTTATGTTCTTTGGCTATTCCAAAAGCGGAAAGCAGCGGGATTATGCATGGGCGAAGCAGGGAATGTTATTCCCCTTCTTGGAGTTCATGGATAGATTCCAGGGGCAGACTCAGTTGTACAAGAGCAAGACAAGTGAGTTTCAAATGGCTATGGAGGAGGCCATGTTGGCGGAAGATGGAATTCTGGACACACAATTGCTACCCGAGCAAATTGGCGAGCATATGAAAGGTGCAGGTTCCAATGCTGAGCAAGACCATTACAGCCAATGCCAGGATGCGATATCCTGTGCTGGGTGCGGTTTGATGTTGCGGGTTAAACCCAAGAAGAAGATGAAGGATTCACCTCTACCTTATTGTAAACACTGTGATAAGTTACAAAAATCAAAACAATATTGCGGCATTTGCAAGAAGATTTGGCACCACTCGGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAATGTGACAAAATTTCCAGCAAACTTCTCAAGGATTTGGAAAATATGGATTACTATTGCCCAGACTGCAAGGGAAAGTTCAATTATAAATTAACATCACCTCAAATCTACAAGTCAAAAGTAAAATCAACAGAGAGTAGCAAAAAACCTGAAATACCTGAAGAGCTAGCGGTGGTATGCAATGACATGAAAGGAATTTACCTTCCAAAGCTTCATTTGGTTATGTGCAAGTGCAGCTCTTGCGGTACAAGAAAGTATAATCTTCCTGAATGGGAACGACATTCAGGATGCAAAGCCAAAAAATGGAAACATACTGTGAAAGTGGAAAGCACAATGCTACCGCTAATAAAATGGATCACCAAACACAATTCACGAGCTGGAGCTCGCCTGGATCAGCAGCAGTTGATTTCCTTCTTGCAAGAGCAGTACGAGCCAGTTTATGCAAAATGGACTACAGAAAGATGTGCCATTTGTAGATGGGTTGAAGACTGGGATGACAACAAAATTATTATCTGTAACAGGTGTCAAATTGCTGTCCATCAAGAATGCTACGGGGCAAAGAATGTTAAGGATTTTACTTCTTGGGTTTGTAGAGTCTGTGAAACTCCTGACATTGAGAGAGAGTGTTGCCTCTGTCCAGTTAAAGGTGGTGCTCTTAAGCCAACCGATGTGGACATGTTGTGGGTTCACACTTGCGTGATATGTAAACAAAGTCATGGTTCGTGTACAAATTGTTGCAAGTGTGCAACATATTTTCATGTTATGTGTGCCTCAAGAATGGGATATAGCATGGAATTGCATTCTGTTGAGAAGAATGGAAAACAAAAAACACAGAAGCTAATTTATTGTAAATTTCACAGGGTGCCAAAGCCAGAGGCAGTACTAGTTGTACATACAGATGAGGGAGTATTCTCTCAAAATAAGGAGGGATGCTATAAGGGATCAAATCTCGTTTCCTCATCCAACAATATTGAACTCCTTGTTGATTCCTCAAAATCTCATAGTTATGAGGTTGAGCCACTCTCTGCTGCCAGGTGTCGTGTCTACGTAAGGTCTTCCAAGAAGAGCAATACTGTCCCAGTAATGCACTTGCTTGGGGGTCCAAATCTCCATTCTTTAGATGCTATAGCTAAACTGGCCAGCAACGAGGATGCTGAAGCATTTTCTTCTCTAAAAGAACGTCTTCACCATTTACAGAAAACTGAAAGCAGTAGAGTTTGCTTAGGAAAATCGGGTGTCCATGGATGGGGCCTCTTTGCTCGAAGAGAATTACAAGAAGGAGAAATGGTTGTTGAGTACCGTGGCGAGCATGTTAGGCGCAGTGTTGCTGATCTGAGGGAAGCTAAGTATCGTTTAGAAGGCAAAGATTGTTATCTGTTCAAGATTAGTGAGGACGTGGTAATCGACGCAACTGAAAAGGGCAATATTGCACGTTTGATAAACCATTCTTGCAACCCGAACTGCTATGCAAGGATAATGAGTCTGAATGATCAAGAGAGTCGGATTGTTCTTATTGCCAAGACCGATCTTTCTGCGGGTGAAGAATTAACGTATGATTACTTGTTCGATCCAGATGAGAGGAATGAACTCAAAGTTCCCTGCCGATGTGGAGCCCCCAATTGTAGAAAGTTTATGAACTAA | 2598 | 0.4365 | MIIKRNLKTGIHTLKCCSKLAESKKRKLDQVYTQPTPTPPAELNHDPVRSPPRRTRILPSRFSDSVLDTWTHHCDSDYHHCLNSVKTVKTSVNGIRSTLLKTEINCRKRKDVYKLDEFVLGDIVWAKCGKSYPPWPALVIDPLLQAPKSVLSRCIPGAICVMFFGYSKSGKQRDYAWAKQGMLFPFLEFMDRFQGQTQLYKSKTSEFQMAMEEAMLAEDGILDTQLLPEQIGEHMKGAGSNAEQDHYSQCQDAISCAGCGLMLRVKPKKKMKDSPLPYCKHCDKLQKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLLKDLENMDYYCPDCKGKFNYKLTSPQIYKSKVKSTESSKKPEIPEELAVVCNDMKGIYLPKLHLVMCKCSSCGTRKYNLPEWERHSGCKAKKWKHTVKVESTMLPLIKWITKHNSRAGARLDQQQLISFLQEQYEPVYAKWTTERCAICRWVEDWDDNKIIICNRCQIAVHQECYGAKNVKDFTSWVCRVCETPDIERECCLCPVKGGALKPTDVDMLWVHTCVICKQSHGSCTNCCKCATYFHVMCASRMGYSMELHSVEKNGKQKTQKLIYCKFHRVPKPEAVLVVHTDEGVFSQNKEGCYKGSNLVSSSNNIELLVDSSKSHSYEVEPLSAARCRVYVRSSKKSNTVPVMHLLGGPNLHSLDAIAKLASNEDAEAFSSLKERLHHLQKTESSRVCLGKSGVHGWGLFARRELQEGEMVVEYRGEHVRRSVADLREAKYRLEGKDCYLFKISEDVVIDATEKGNIARLINHSCNPNCYARIMSLNDQESRIVLIAKTDLSAGEELTYDYLFDPDERNELKVPCRCGAPNCRKFMN | 865 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip06g01232 | 865 | Pfam | PHD-finger | 291 | 344 | IPR019787 | - | |
| Aip06g01232 | 865 | Gene3D | - | 113 | 220 | - | - | |
| Aip06g01232 | 865 | Pfam | PWWP domain | 121 | 217 | IPR000313 | - | |
| Aip06g01232 | 865 | Pfam | SET domain | 734 | 839 | IPR001214 | GO:0005515 | |
| Aip06g01232 | 865 | SUPERFAMILY | Tudor/PWWP/MBT | 117 | 221 | - | - | |
| Aip06g01232 | 865 | SUPERFAMILY | FYVE/PHD zinc finger | 472 | 536 | IPR011011 | - | |
| Aip06g01232 | 865 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 465 | 524 | IPR013083 | - | |
| Aip06g01232 | 865 | SUPERFAMILY | SET domain | 717 | 862 | IPR046341 | - | |
| Aip06g01232 | 865 | ProSiteProfiles | Zinc finger PHD-type profile. | 471 | 522 | IPR019787 | - | |
| Aip06g01232 | 865 | SMART | PostSET_3 | 849 | 865 | IPR003616 | - | |
| Aip06g01232 | 865 | CDD | PHD_ATX3_4_5_like | 473 | 519 | IPR042011 | - | |
| Aip06g01232 | 865 | ProSitePatterns | Zinc finger PHD-type signature. | 474 | 519 | IPR019786 | - | |
| Aip06g01232 | 865 | SMART | PHD_3 | 550 | 606 | IPR001965 | - | |
| Aip06g01232 | 865 | SMART | PHD_3 | 291 | 343 | IPR001965 | - | |
| Aip06g01232 | 865 | SMART | PHD_3 | 473 | 520 | IPR001965 | - | |
| Aip06g01232 | 865 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 3 | 865 | IPR025780 | - | |
| Aip06g01232 | 865 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE | 548 | 865 | - | - | |
| Aip06g01232 | 865 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE | 1 | 549 | - | - | |
| Aip06g01232 | 865 | Gene3D | SET domain | 701 | 865 | IPR046341 | - | |
| Aip06g01232 | 865 | MobiDBLite | consensus disorder prediction | 27 | 52 | - | - | |
| Aip06g01232 | 865 | ProSiteProfiles | Post-SET domain profile. | 849 | 865 | IPR003616 | - | |
| Aip06g01232 | 865 | ProSiteProfiles | SET domain profile. | 723 | 840 | IPR001214 | GO:0005515 | |
| Aip06g01232 | 865 | PANTHER | PHD FINGER PROTEINS | 548 | 865 | - | - | |
| Aip06g01232 | 865 | Pfam | PHD-zinc-finger like domain | 548 | 605 | - | - | |
| Aip06g01232 | 865 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 280 | 344 | IPR013083 | - | |
| Aip06g01232 | 865 | CDD | SET_SETD1-like | 712 | 861 | - | - | |
| Aip06g01232 | 865 | ProSiteProfiles | PWWP domain profile. | 120 | 189 | IPR000313 | - | |
| Aip06g01232 | 865 | Pfam | PHD-finger | 486 | 520 | - | - | |
| Aip06g01232 | 865 | SMART | set_7 | 723 | 846 | IPR001214 | GO:0005515 | |
| Aip06g01232 | 865 | SUPERFAMILY | FYVE/PHD zinc finger | 288 | 350 | IPR011011 | - | |
| Aip06g01232 | 865 | ProSiteProfiles | Zinc finger PHD-type profile. | 289 | 345 | IPR019787 | - | |
| Aip06g01232 | 865 | PANTHER | PHD FINGER PROTEINS | 1 | 549 | - | - | |
| Aip06g01232 | 865 | SMART | PWWP_4 | 118 | 187 | IPR000313 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip06g01232 | Aip-Chr6 | 18201227 | 18206425 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip06g01232 | 717 | 865 | C2H2 Transcription Factor Family | AT2G23740 | 34.337 | 4.03e-16 | 81.6 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Aip06g01232 | SET | 1.9e-18 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip06g01232 | - | - | lja:Lj1g3v5034780.1 | 1209.13 |