Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01230 ATGAATGCATGGGAACCAAAATTTGTTCGGTTTGAAGACTGGAGGTCGACATCATCGGAGCAAGAGAGTTCTGTTAATAATGGATATAATGAAAGAAAAGGTATGCCAAGTGTAGGTGCTGTTTTGAAGAGTATTGGAAGAAAACTGGAGAGTGGTTCCGAAAAGTTCAAGAACTTGAGGAAACCTTCAACTGTTCATCCTGTAAGTGATAGACCAAAAGAGAAACTGGCTTCTAGAAGAAGCAACATTCTTGATCCACAAGGACGAACCCTTGAAAAATGGAACAAGATTTTTGTGATCACATGTGTGATGGCAATCTCTGTGGATCCGCTCTTCTTTTACATTCCAGTGATCAATGACAAAGAGAAATGTCTGAATTTGGATGGCACGTTGCGAATCACCACTAGTGTTCTTCGAACATTCTTTGATCTTTTCTACATTCTTCGCATAATCTTTCAGTTTCGAACAGGGTTTATTGCCCCGTCTACTCGTGTTTTTGGAAGGGGTGAGGTGAACAACAATCCGGTGGCTATAATGAAAAGATACTTAAGTTCATACTTCATCATTGACATCCTCTCAATTATTCCAATTCCTCAGGTGCTGGTTTTAGCTGTAACTCCAAAGATGAAAAGCTCACCGTTTTTAGCAAAGGACTTGTTGAAGTATGTAATATTGGTCCAATATGTGCCAAGACTTCTGCGGATATGGCCATTATTCAGAGAAGTAACGAGAACTTCTGGTATATTGACCGAGACTGCATGGGCTGGAGCTGCTTTTAATCTTGGTCTTTATATGCTAGCAAGTCATGTTGTTGGAGCTAACTGGTATATGCTTTCAGTAGAATCAGAGGCAAGATGCTGGCGCAAAGTGATGGAAAATGATAGGGACTTTAAAGATTCATACCTGGGCTGTGGACCTAACAGAGAATTTGTCATACCACTTCTCAGAAAAAATACTACTTGCCCTTTCATTGACCCTGATCAAAACCAAGACCCAAATGCCTTTGATTTTGGAATATTCAATGATGCTTTAGAATCATCTGTGGTGAATTCCGAAACAGATTTTCTTAAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTACGCAATTTGAGTTCTGTTGGACAAAACCTCAAGACAAGCACCTACATTGTGGAGATACTCTTTGCCATCTTCATAGCCATTGCTGGATTGGTTTTATTTGCATTACTTATTGGAAACATGCAGAAATATTTGCAATCAACAACTGTTAGAGTTGAGGAGATGAGAGTCAAGAGGCGCGACGCAGAAAGATGGATGTCTCATCGTATGCTTCCTGAGAGACTGAGGGACAGAGTTAGACGGTATGAACAATACAAATGGCAACAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGCACCCTCCCTAAAGATCTAAGGAGGGACATAAAGCGTCATCTCTGCTTGGCTTTAGTTAAAAAAGTGCCAATATTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGTGATAGACTGAAGCCGGTCCTGTATACAGAAAAGAGCTACATTGTTCGCGAAGGAGATCCGGTTGATGAGATGCTCTTTGTCATGCGTGGAAACCTCGCTTCCATGACAACAAACGGTGGAAGAACTGGTTTCTTCAACTACACGGTTCTTGAGGCCGGTCAGTTCTGTGGCGAGGAGCTGTTAACATGGGCCCTGGATCCTCACTCCTCCACAAATCTTCCCACCTCAACCAGAACAGTAGAAACCATATCAGAAGTTGAAGCCTTTGCTCTCATGGCCGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTTCAGAACAAACAACTTCAGCACACTTTCAGGTACTATTCGATGCAATGGAAGACATGGGCTGCCTGTTTCATACAAGTAGCATGGCGTCGATACTGGAAAAAGAAGGTTGAGAGGCAATTACGCGAAGCAGAAGACAGGCTACAAGGTGCCTTTGTAAATGAGGATGAATCCTCTCTAAGCCTTGGTGCAACCATATATGCATCACGGTTTGCTGCTAATGCATTGAGAAACTTGAGAGAAAACAGCGAACGCAACAAGAGAATGCCACAGAGACTACCTCTGCTTCCTCCAAAGCCCGCCGAGCCAGATTTCTCTACTCAGGAACACTAG 2157 0.4247 MNAWEPKFVRFEDWRSTSSEQESSVNNGYNERKGMPSVGAVLKSIGRKLESGSEKFKNLRKPSTVHPVSDRPKEKLASRRSNILDPQGRTLEKWNKIFVITCVMAISVDPLFFYIPVINDKEKCLNLDGTLRITTSVLRTFFDLFYILRIIFQFRTGFIAPSTRVFGRGEVNNNPVAIMKRYLSSYFIIDILSIIPIPQVLVLAVTPKMKSSPFLAKDLLKYVILVQYVPRLLRIWPLFREVTRTSGILTETAWAGAAFNLGLYMLASHVVGANWYMLSVESEARCWRKVMENDRDFKDSYLGCGPNREFVIPLLRKNTTCPFIDPDQNQDPNAFDFGIFNDALESSVVNSETDFLKKFFYCFWWGLRNLSSVGQNLKTSTYIVEILFAIFIAIAGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAERWMSHRMLPERLRDRVRRYEQYKWQQNRGVEEEALIRTLPKDLRRDIKRHLCLALVKKVPIFEKMDEQLLDAMCDRLKPVLYTEKSYIVREGDPVDEMLFVMRGNLASMTTNGGRTGFFNYTVLEAGQFCGEELLTWALDPHSSTNLPTSTRTVETISEVEAFALMADDLKFVASQFRRLQNKQLQHTFRYYSMQWKTWAACFIQVAWRRYWKKKVERQLREAEDRLQGAFVNEDESSLSLGATIYASRFAANALRNLRENSERNKRMPQRLPLLPPKPAEPDFSTQEH 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01230 718 ProSiteProfiles cAMP/cGMP binding motif profile. 490 574 IPR000595 -
Aip06g01230 718 SUPERFAMILY cAMP-binding domain-like 419 614 IPR018490 -
Aip06g01230 718 Pfam Ion transport protein 94 418 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aip06g01230 718 SMART cnmp_10 490 621 IPR000595 -
Aip06g01230 718 Gene3D - 96 414 - -
Aip06g01230 718 SUPERFAMILY Voltage-gated potassium channels 85 412 - -
Aip06g01230 718 Gene3D Jelly Rolls 488 608 IPR014710 -
Aip06g01230 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 716 - -
Aip06g01230 718 Coils Coil 642 662 - -
Aip06g01230 718 Gene3D Helix hairpin bin 417 481 - -
Aip06g01230 718 CDD CAP_ED 490 621 IPR000595 -
Aip06g01230 718 MobiDBLite consensus disorder prediction 690 718 - -
Aip06g01230 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01230 Aip-Chr6 18169201 18173364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01230 1 717 Ion Channels AT5G53130 62.431 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01230 K05391 - gmx:100797784 1065.45