Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01174 ATGGCGAGGAGAGAGAGAGGTTTGTCTGCATCTGCGGCGGATGGAGGTGGTGGAAAAGCGGCGGAATTGAAGGAGAAGCTGAGGGGGCTGGTGAAGGCCATCGTGGAGAACGACGACTACACCACGCGCCACGCTGAAGACGCCATCGCCACTCTATCGACTCTTAGGCTCTTCACGCTGTTTTATTTTTATTTTTTTATGTTCTTCCTTTTTAGGCATCTAACCGCTTCCACATGTTCCTCGCCTCTCCGACAACCCAATTGTTCTACTTATGATCGGGCATACATTCAGAGGTGGTTGGATGAAGGGCACAGAACATGCCCTCAAACCCAACAAGTCCTTTCTCACACTAATCTTACTCCAAATTACTTGGTCCGGGACATGATTGCGCAGTGGTGTAAAGAGCATGCAATTGAGATGCCAAAGCCGGTTCAGGACATCAACCAAGTAGTAAGTAATGCGGATAGAGACCACTTGGATTCATTACTTCATAAGCTGTCATTGTCTGTCCCTGATCAGAAAGAAGCTGCAAGAGAGCTTCGCCTCCTAACAAAGAGAATGCCTTCCTTTAGAACCCTCTTTGGGGAGTCCGTTGATGTGATTCCGCAGTTGCTCAGTCCATTATCGCCTAATACGGCTCATGTTCACCCCGATCTCCATGAGGACTTGATTACAACTATTCTAAATCTCTCGATTCATGACGATAATAAGAAAGTATTTGGAGAGGATCCAACTGTCATTGCTCTTCTCATTGATGCCTTGAAATCCGGAACAATTCAAACAAGGAGCAATGCCGCAGCAGCCATTTTCACATTATCGGCTCTTGACTCCAACAAGCACATCATTGGAAAGTCTGGAGCCATCAAACATTTGCTTGACCTTTTAGAGGAGGGACAGCCATTAGCCGTGAAAGATGCTGCCTCAGCTATATTCAACCTATGTCTTGTGCACGAGAATAAAGGGAGGACCGTGAGAGAAGGTGCAGTCCGGGTCATTCTGAAGAAGATCATGGACCACATTCTAGTTGATGAGTTGCTCGCTATATTGGCACTCCTTTCCAGCCATCCCAAGGCCATTGAAGAAATGGGGGATCTCGGAGCTGTAGCCTTCTTGCTGGCTATCATTAGGGAGGGCACGTCAGAGCGAACCAAGGAGAATTGTGTTGCAATTTTATATACAATCTGTTACGGTGATAGAACAAAGTTGAAGGAAGTTAGAGAAGAAGAAAAAGCCAACGGTACCCTGTCGAAACTTGCGCGACACGGGACGTCAAGGGCAAAAAGGAAGGCTAATGGAATTCTTGAGAGGCTCAATCGATCACCCTGCTTAACACACACTGCTTAA 1344 0.4688 MARRERGLSASAADGGGGKAAELKEKLRGLVKAIVENDDYTTRHAEDAIATLSTLRLFTLFYFYFFMFFLFRHLTASTCSSPLRQPNCSTYDRAYIQRWLDEGHRTCPQTQQVLSHTNLTPNYLVRDMIAQWCKEHAIEMPKPVQDINQVVSNADRDHLDSLLHKLSLSVPDQKEAARELRLLTKRMPSFRTLFGESVDVIPQLLSPLSPNTAHVHPDLHEDLITTILNLSIHDDNKKVFGEDPTVIALLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLDLLEEGQPLAVKDAASAIFNLCLVHENKGRTVREGAVRVILKKIMDHILVDELLAILALLSSHPKAIEEMGDLGAVAFLLAIIREGTSERTKENCVAILYTICYGDRTKLKEVREEEKANGTLSKLARHGTSRAKRKANGILERLNRSPCLTHTA 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01174 447 Gene3D - 340 441 IPR011989 -
Aip06g01174 447 Pfam Armadillo/beta-catenin-like repeat 278 314 IPR000225 GO:0005515
Aip06g01174 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 139 IPR013083 -
Aip06g01174 447 Gene3D - 196 339 IPR011989 -
Aip06g01174 447 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 18 445 - -
Aip06g01174 447 SUPERFAMILY RING/U-box 81 143 - -
Aip06g01174 447 PANTHER U BOX DOMAIN-CONTAINING 18 445 - -
Aip06g01174 447 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Aip06g01174 447 ProSiteProfiles U-box domain profile. 90 139 IPR003613 GO:0004842|GO:0016567
Aip06g01174 447 SUPERFAMILY ARM repeat 167 437 IPR016024 -
Aip06g01174 447 Pfam U-box domain 80 137 IPR003613 GO:0004842|GO:0016567
Aip06g01174 447 SMART arm_5 355 396 IPR000225 GO:0005515
Aip06g01174 447 SMART arm_5 275 315 IPR000225 GO:0005515
Aip06g01174 447 SMART arm_5 233 274 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01174 Aip-Chr6 17239461 17241179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01174 128 447 U-box Gene Family AT3G07360 58.663 1.16e-126 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01174 - - aip:107645738 600.512