Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01137 ATGCACGGTTTCGCTGTGAGGTTGGATGAAGTCAGACGCGATAGCGATGGTTCCGTAATTATACGCCAAATTGTTTGCAATCGGGCGGGCTCAAGAAAGGAAGAGGTTGAAAAGGACGAAAGAATCAGGGACCACCGACCCCTAACTCGAAGTTGTTGCCGGGCGAGAATTCGTGCAAGACTAGATACAAAAATTCAGAAATGGAAGGTTGTTTCGTTATACGAAGAGCACTCTCATGAATTAGTTGATCCACTCGACGTTAGCATGATGCCTGAGTTTCGCACATTCAGTGTATCGGATAAAGATCAGGGAAAGAATTTGCACGACATAGGCATCAGGACCTGTCACATCTTGGGATACTTGGCTGCTCAAAAAGGTGGATATGCAAACTTGTCATTCAACCAAAAAGATATGTACAACCTCATTACTCAACATAGGAAGGAAAAGGTGAAGGGTGGTGATGCAAATGCTGCAATAAGCTACCTGAGAGGTAAAGTTGGGAATGATTCTTATTTCTTTGGCAAGTACACATTAAGTAATGAGAATCGATTGGAAAATTTGTTCTGGGCTAATGGGACTAGCCGTATTGATTATGAGTGCTTTGGGGATGTCTTGACATTTGATTCGACTTACAATAGGAATATCTACAATAAACCACTTGTGATATTTTCTGGTAGCAATCATCATGGGCAGACTGTCATATTTGGTTGTGGTCTTCTTGTTAATGAGGATATTGGTTCATACAAGTGGCTCTTGGAAACTTTTTTGGAAGCAATGGGGAGTAAACACCCTACGGCAGTTGTCACCGACGGAGATCTTTCAATGAGAGAAGCAATTAAACAGGTCTTTCCTTATGCAACACATCGACTATGTGCATGGCACTTACATAGGAATGCATGCGAGAAGGTTAAGAACAGTGGATTTCTAAATGACTTCAAGAAATTGATTTATGCCAATGTGAGTGTTGTAGAGTTTCAGGTCATGTGGGAAGACATGGTGGCCAGGACAACATCCCAGTGTGAAGGGATTAACTCTCTAATAAAAGCATATGTGAGAAAGAAAGATACCCTTGAATTCATCAATAACATGGAGACCGTGGTTAGCCATTACAGGAACAATGAAAGAGTCGCAGAGTTCAATAGTAAATATACCGATCCAGTACTTGTGACTTCTTTGCCGACACTTGAAGATTTTGCTGCAAAGACTTTCACTCGTAACATGTTCCGGGAGGTCAGAAAGGAAATTGAGGGTGCTTGTGCAATGAATACAGAGTTGGTAATTCACGATAGTGGAAAACTATACTTCAAGTGTAACATTTTTGGAGTGCCAGAGATTGATCATGTGGTTGAGTTTGACAGAGTTAGGGAGATGCTTCGTTGCGAGTGTCTGTGGTTCGAAAATAGAGGGATTCCCTGCATGCACATATTTGTCTGCCTAAAGCACCAACACGTTGAAGTTATTCCAGAATGCTTAGTGTGTAAGCGTTGGACGAAGATTGCCAAGAGTGACTTTATGAAGACAAACGTCGATGATCCAAGTGATTCTGATAAGGTACTAAAGTGTCGTTTGGGTGTGTTGGGTGCTGAGTGTTCTAGGTTGATGGATGTTGCATGTAAGAACTCAAGTGATTTTGTCGAAGCAATGAATGTTGTTGTCAACACAATTAGAAAACTTCAAAAGCGAGGTGAAAATTCACGCAACGGTAACTTAGACGATGACTACATTGTTGACCCATTGGTGGTGAAGAGTAAGGGAGCCCTCAAGAAAAACTCAAAATTTAAGCAACAGAGAAGGTGCTCAAACTGCGGTGTGACAGGGCACTACAACAAAAGTTGTCCTAATCTTCCTGGTAGAATTCCAAAGGAGCCAGTAGACGATGATACAGAAAAGAATATCAGCAGCCATCTTGACATCTTCACTAAGCGCAAAAGACATGATAGTCTGAAAAATCAGCAGAAGATGGAAAAAGATAGGAACATTGGTGGTGGAATAGCACCAACCTACGGAAGGAACATTGGTGGTGGAACAGCACCAACCTCAGCAGCTAAATCGAATTTTACTGATCAAGTAAAAACATCAAGTCTTGGTCCCGATATCTCGGTTTGTGCATCTACAAGTAACGAAGAGTCCGAGTTGAGTTCCAGACCAGCAGAGTCTCCTGTTGTGGCCCCTGAAACTGGAATGGCAGATTGA 2193 0.4209 MHGFAVRLDEVRRDSDGSVIIRQIVCNRAGSRKEEVEKDERIRDHRPLTRSCCRARIRARLDTKIQKWKVVSLYEEHSHELVDPLDVSMMPEFRTFSVSDKDQGKNLHDIGIRTCHILGYLAAQKGGYANLSFNQKDMYNLITQHRKEKVKGGDANAAISYLRGKVGNDSYFFGKYTLSNENRLENLFWANGTSRIDYECFGDVLTFDSTYNRNIYNKPLVIFSGSNHHGQTVIFGCGLLVNEDIGSYKWLLETFLEAMGSKHPTAVVTDGDLSMREAIKQVFPYATHRLCAWHLHRNACEKVKNSGFLNDFKKLIYANVSVVEFQVMWEDMVARTTSQCEGINSLIKAYVRKKDTLEFINNMETVVSHYRNNERVAEFNSKYTDPVLVTSLPTLEDFAAKTFTRNMFREVRKEIEGACAMNTELVIHDSGKLYFKCNIFGVPEIDHVVEFDRVREMLRCECLWFENRGIPCMHIFVCLKHQHVEVIPECLVCKRWTKIAKSDFMKTNVDDPSDSDKVLKCRLGVLGAECSRLMDVACKNSSDFVEAMNVVVNTIRKLQKRGENSRNGNLDDDYIVDPLVVKSKGALKKNSKFKQQRRCSNCGVTGHYNKSCPNLPGRIPKEPVDDDTEKNISSHLDIFTKRKRHDSLKNQQKMEKDRNIGGGIAPTYGRNIGGGTAPTSAAKSNFTDQVKTSSLGPDISVCASTSNEESELSSRPAESPVVAPETGMAD 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01137 730 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 339 584 IPR031052 GO:0006355
Aip06g01137 730 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 336 IPR031052 GO:0006355
Aip06g01137 730 MobiDBLite consensus disorder prediction 646 730 - -
Aip06g01137 730 Pfam FAR1 DNA-binding domain 2 82 IPR004330 -
Aip06g01137 730 Pfam MULE transposase domain 204 298 IPR018289 -
Aip06g01137 730 ProSiteProfiles Zinc finger CCHC-type profile. 597 614 IPR001878 GO:0003676|GO:0008270
Aip06g01137 730 PANTHER OS02G0262500 PROTEIN 339 584 - -
Aip06g01137 730 PANTHER OS02G0262500 PROTEIN 2 336 - -
Aip06g01137 730 ProSiteProfiles Zinc finger SWIM-type profile. 445 483 IPR007527 GO:0008270
Aip06g01137 730 MobiDBLite consensus disorder prediction 673 714 - -
Aip06g01137 730 SUPERFAMILY Retrovirus zinc finger-like domains 589 620 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01137 Aip-Chr6 16539415 16541904 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip06g01137 MULE 1.7e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01137 - - aip:107641230 1296.57