Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01130 ATGCTTCTATGCGAGGTTCTTGCACAGGGAAGTGGCGGTGATGCAGCGGAAAACTCCTCCACCGAAGAGGTGAACTCAACCACGGCGGCGCTGCAGCCACAACAACCATCTTACAGAGGGGTAAGAAGGAGGCCATGGGGAAAGTACGCGGCAGAGATAAGGGACTCGACGAGGAACGGCGAGAGGGTATGGTTGGGAACCTTTGATACGGCGGAGGAAGCTGCTTTGGCTTACGACCAAGCGGCATTGGCAAGTAGAGGATCAGTGGCGGTTTTGAACTTCCCGGCAGGGATGGTTGTTGAATCGCTAGAGAAGATGATGATGGAGTGTGGTGGGTTTAGTGAAGATTGTTCTCCGGTGTTGGAGCTGAAGAAGAAGCATTCCATGAAGAGGAAGATGGAGAACAGGGAGAAGAAACTGCTCATGATGATGAATACAAATAATAACAATCATCATAATCATGTCATGGTATTCCAGGATTTGGGTGCTGACTATTTGGAACAACTTCTTACAATCTCGTCCAACGATGCAATGCTATAG 540 0.4926 MLLCEVLAQGSGGDAAENSSTEEVNSTTAALQPQQPSYRGVRRRPWGKYAAEIRDSTRNGERVWLGTFDTAEEAALAYDQAALASRGSVAVLNFPAGMVVESLEKMMMECGGFSEDCSPVLELKKKHSMKRKMENREKKLLMMMNTNNNNHHNHVMVFQDLGADYLEQLLTISSNDAML 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01130 179 PANTHER DNA-BINDING DOMAIN 16 173 IPR044808 GO:0003700|GO:0009873
Aip06g01130 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 16 173 - -
Aip06g01130 179 ProSiteProfiles AP2/ERF domain profile. 37 95 IPR001471 GO:0003700|GO:0006355
Aip06g01130 179 SMART rav1_2 37 101 IPR001471 GO:0003700|GO:0006355
Aip06g01130 179 SUPERFAMILY DNA-binding domain 37 96 IPR016177 GO:0003677
Aip06g01130 179 Pfam AP2 domain 36 87 IPR001471 GO:0003700|GO:0006355
Aip06g01130 179 MobiDBLite consensus disorder prediction 9 40 - -
Aip06g01130 179 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Aip06g01130 179 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Aip06g01130 179 CDD AP2 36 96 IPR001471 GO:0003700|GO:0006355
Aip06g01130 179 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Aip06g01130 179 MobiDBLite consensus disorder prediction 13 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01130 Aip-Chr6 16457378 16457917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01130 18 175 AP2-EREBP Transcription Factor Family AT3G23240 51.235 1.32e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip06g01130 AP2 7.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01130 K14516 - qsu:112003251 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00961 02 16819492 16820235 Aip06g01130 06 16457378 16457917 ECH
Aip06g01130 06 16457378 16457917 Aip06g01130 06 16457378 16457917 ECH
Aip06g01130 06 16457378 16457917 Aip02g00960 02 16800675 16801409 PCT