Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01101 ATGGCAAAAACTCCTTGTTGTGAGAGAATGGGTTTGAAGAAGGGACCCTGGACTGCTGAAGAAGATCAGATATTGACATCTTTCATTCATAGATATGGCCATGGAAACTGGCGTGCACTTCCTAAACAAGCTGGTGAGTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACCTGAGGCCAGATATTAAAAGAGGGAAATTCAGCAAGGAAGAGGAAGAGGCCATTCTCAAACTACATGCAGTTCTTGGAAATAGGTGGTCTGCGATTGCAGCAAGATTACCGGGTCGTACAGATAATGAAATAAAGAACTTTTGGCACACTCATTTGAAGAAAAGGATTGAGAAAAGTGAAGTGCACAATAATGGCATCAATAGTAGTAAATATTCCTCGTGTTCCTCACAAATCATCACCATGCCAAGAGTAGTACCAGCAATTGCACCAAGTAGTGGTAGTGGTAGTGCTGCTTCTAGCTTCAATGATGGTTTATCCTCAACCTCAAGGAATAGATCAAGTTCATCACCAAATATTATTGCAGGACCAGGATTTTGCAGTGCAACAACATCCTCTTCTGATGATACTTCAGGTGAAACCATGGGAAATCATAACGATGGTTCCATTCAGCTCAGTGAAGAGATGGAATTTTGCCAAAGTTACAGCGACCATGATGCATCCTCATTCAGATTGCTTGCTAATTCCATTCAGAAATTCGGCGAGATATATGAGAAGATTGAGAACAGTAGAAGGCAGCAGACGGTGGAACTGGAAAAGATGAGGATGGAGTTCCATAAAGATATTGAAACACAAGAGGCAGATCTTAGAGAGAGTTCAGAGTGA 846 0.4161 MAKTPCCERMGLKKGPWTAEEDQILTSFIHRYGHGNWRALPKQAGELLRCGKSCRLRWINYLRPDIKRGKFSKEEEEAILKLHAVLGNRWSAIAARLPGRTDNEIKNFWHTHLKKRIEKSEVHNNGINSSKYSSCSSQIITMPRVVPAIAPSSGSGSAASSFNDGLSSTSRNRSSSSPNIIAGPGFCSATTSSSDDTSGETMGNHNDGSIQLSEEMEFCQSYSDHDASSFRLLANSIQKFGEIYEKIENSRRQQTVELEKMRMEFHKDIETQEADLRESSE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01101 281 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Aip06g01101 281 SMART sant 13 64 IPR001005 -
Aip06g01101 281 SMART sant 67 115 IPR001005 -
Aip06g01101 281 CDD SANT 16 62 IPR001005 -
Aip06g01101 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Aip06g01101 281 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aip06g01101 281 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aip06g01101 281 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Aip06g01101 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aip06g01101 281 Gene3D - 69 138 - -
Aip06g01101 281 Coils Coil 244 264 - -
Aip06g01101 281 MobiDBLite consensus disorder prediction 153 205 - -
Aip06g01101 281 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 203 - -
Aip06g01101 281 CDD SANT 70 113 IPR001005 -
Aip06g01101 281 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aip06g01101 281 PANTHER MYB TRANSCRIPTION FACTOR 1 203 - -
Aip06g01101 281 Gene3D - 13 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01101 Aip-Chr6 16221177 16222773 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01101 1 140 MYB Transcription Factor Family AT2G31180 66.667 3.48e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip06g01101 Myb_DNA-binding 8.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01101 K09422 - gmx:778176 253.832