Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01100 ATGTCAAATAACAGCACAAATGGAGGTAAGAAGAGAAAACTCTGTCCACCAAAAGAATCCGAAGATTGGTGCTTTGAATGCAAGGATGGTGGAGAAGTCATTGTATGCGATCGCAGGAACTGTGTGAAGGTTTATCACTCCTACTGTGTTCCTGTTACCCCTGAGAAGGACAAATCTTGGATTTGTGCTTGGCATTATTGCTTCGAATGCAAGGAATCCGCAAAGTTTTATTGCCTTGGTTGTCCAAATGCTTTGTGCAAAGAGTGCTTGGCTTCCTCAGAATTTATCACTGTCAAGGGTGATAAAGGATTATGCTGCAACTGCGCGCCGCTAGTCAAAATTATAGAACAAAATTTGGACCGTGACTCTCAGGGGAACAAGATAAGCGTGGATGGAAGAGATACATATGAGGGTCTATTCAAGGAATACTGGGAAATTATTAAGCTAAACGAAGGATTAACTAGTGATGATATCTCTGCTGCACAAACCAACTACAACAAAATGGTTAAAAATTCTCCAGATCAAAGCAAAGTCATTGATGTAGATAAAGAAAGTCAGAATGACTCCATGTCATCGGACGGCAATGAAGCTTTTATGTATAAACACAACTCAACCAAAAGGAAGCAGTCCAGTTCACTGGAGTTTATGGGATGGGGATCGAAACCTCTCCTTAGCTTCCTTGCGTCCATTGGAAAATTTAGTACTGAACCATTGTCACAGTGGGATATACGGACTCTTGTGTGTGAATACATTGAGAAGAACAATCTCTATCTCTCGCAAGATAAGAGGAAGTTCCTCCTTGATGAAAAGTTGTTTCCTATATTCGGAAAAAAGGTTGTTGGAGCCTTGGTTAGAGTTAAAATGGATTCCAGTGATTGTATGCAGACGAGGTCTTACCATCTTGTGAGAGTTACAGGTGTTGTATTGGAGGATGATGTTAAGAGAATTCTTTTGCAAGTTTCCTTCATGTCTAAAGCCATCCCTATCTCCGAGCTTTCTGATAATGACTTCACAGAGCAAGAATGTGAGGATTTGCGGCTAAAAGTGAAAGCCAACCTGCTGCAGAAACTAACTGTTGTGGAGCTTCAAGAAAAGGCAAAAAGTCTTCATGAGGATATAACAAAGCAT 1128 0.4069 MSNNSTNGGKKRKLCPPKESEDWCFECKDGGEVIVCDRRNCVKVYHSYCVPVTPEKDKSWICAWHYCFECKESAKFYCLGCPNALCKECLASSEFITVKGDKGLCCNCAPLVKIIEQNLDRDSQGNKISVDGRDTYEGLFKEYWEIIKLNEGLTSDDISAAQTNYNKMVKNSPDQSKVIDVDKESQNDSMSSDGNEAFMYKHNSTKRKQSSSLEFMGWGSKPLLSFLASIGKFSTEPLSQWDIRTLVCEYIEKNNLYLSQDKRKFLLDEKLFPIFGKKVVGALVRVKMDSSDCMQTRSYHLVRVTGVVLEDDVKRILLQVSFMSKAIPISELSDNDFTEQECEDLRLKVKANLLQKLTVVELQEKAKSLHEDITKH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01100 376 Pfam Plus-3 domain 272 348 IPR004343 GO:0003677
Aip06g01100 376 PANTHER ZINC ION BINDING / DNA BINDING PROTEIN 275 376 - -
Aip06g01100 376 PANTHER ZINC ION BINDING / DNA BINDING PROTEIN 11 278 - -
Aip06g01100 376 ProSiteProfiles Plus3 domain profile. 250 374 IPR004343 GO:0003677
Aip06g01100 376 ProSiteProfiles SWIB/MDM2 domain profile. 212 301 IPR003121 -
Aip06g01100 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 112 IPR013083 -
Aip06g01100 376 SUPERFAMILY Plus3-like 262 372 IPR036128 GO:0003677
Aip06g01100 376 Gene3D - 250 371 IPR036128 GO:0003677
Aip06g01100 376 CDD SWIB-MDM2_like 218 280 - -
Aip06g01100 376 PANTHER OS01G0884500 PROTEIN 275 376 IPR045894 -
Aip06g01100 376 PANTHER OS01G0884500 PROTEIN 11 278 IPR045894 -
Aip06g01100 376 SUPERFAMILY SWIB/MDM2 domain 206 281 IPR036885 -
Aip06g01100 376 SMART rtf1 247 351 IPR004343 GO:0003677
Aip06g01100 376 SUPERFAMILY FYVE/PHD zinc finger 19 70 IPR011011 -
Aip06g01100 376 Pfam SWIB/MDM2 domain 223 278 IPR003121 -
Aip06g01100 376 SMART PHD_3 23 66 IPR001965 -
Aip06g01100 376 CDD PHD5_NSD 23 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01100 Aip-Chr6 16211943 16214783 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01100 7 90 PHD Transcription Factor Family AT3G14980 31.522 6.57e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aip06g01100 Plus-3 9.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01100 - - aip:107645780 592.808