Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01088 ATGTCTTCATCTTCTCCTGTTCTTCCAACACCACTGGATAACAAGTACATGAAACCCCCAGATTCGTTTCAGCTTTCGCCTATAAGAGAAATGACTGTGAATCCATCCCCCTTACAATCTACATCGTCGAATTCCAACACCAGAAGTACCGGACACACATTTTCGTCCCCTGGTGTTGTCTCTTTTTCTTCAGCTTCGCAGCATGAAAGGCAGCATCAACCTTCTTCCTTTGTTTCACAGACATTAGGTGAAGACAGTGTGTCTTCGGAGCTACATTCAGCATCATTCATTTCCCAGCCTCAAGAAAGCGACGAGATTTCCTGGGGACCGGATCCGTTCCAGGATATGCTTGGTTTCCCTGAAAATGTTTCTGTCCAGCATGATCAGGTGGAAAATGGTGCTTGTTATACAAACGATGACAATGTCAAACAATCTGATTTTGGGGAGTGGGTTGATAAGTTAATGTCAATTGATGATTCTTATGACCCAAATTGGAGTCAGCTCCTTGGTGATGATAATGAATCAGAACCAAAACCAAAGCCCATCCAGCAGCAGAATGTACCATCTAAAGAAGTTAAAGGTCTTCCTAGTTCTCCATCAACTGCATCACAAACGAAGCCTCGAATGCGTTGGACACCAGAACTTCACGAGGCCTTTGTGGAAGCGGTGAATCAGCTTGGTGGCAGCGAGAAGGCTACTCCCAAGGGGGTCTTGAACCTCATGAAAGTTAAGGGCCTTACGATCTACCATGTCAAAAGCCACCTACAGAAGTATAGAACGGCCAGGTACAAACCTGAGACCCCAGAAGGAACTTCTGAGAAAAAGCTAAGTTCAATTGAAGAAATGAAATCTCTAGACTTGAAAACGAGTAAGGGGATTACCGAGGCATTGCGGTTGCAAATGGAACTCCAGAAGCGGCTTCACGAGCAACTTGAGATCCAAAGGAAGTTGCAGATTCAAATAGAAAACCAAGGGAAGCGCCTCCAGATGATGTTCGAGCAGCAGAGAGAGATGGGAGATAGCAAGTTTAAGGACTCCTCCTCTTCCTCCTTGGACGAGCCTTCCAATTCAGAAGCTCCAAAAGAGCAAAATGAGAAATTAGGAAGTGGAAGTTGCATAACGAAAGCCGGGCCAGGAGAAAGCTCTTGGGACGAAAGCACGAAGCAGGAAATGGCAGATGAAGCTCAAGTTAGTGTCCCACCACCCACAAAACGGGTCAAGACTTAA 1227 0.4564 MSSSSPVLPTPLDNKYMKPPDSFQLSPIREMTVNPSPLQSTSSNSNTRSTGHTFSSPGVVSFSSASQHERQHQPSSFVSQTLGEDSVSSELHSASFISQPQESDEISWGPDPFQDMLGFPENVSVQHDQVENGACYTNDDNVKQSDFGEWVDKLMSIDDSYDPNWSQLLGDDNESEPKPKPIQQQNVPSKEVKGLPSSPSTASQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVKGLTIYHVKSHLQKYRTARYKPETPEGTSEKKLSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKRLQMMFEQQREMGDSKFKDSSSSSLDEPSNSEAPKEQNEKLGSGSCITKAGPGESSWDESTKQEMADEAQVSVPPPTKRVKT 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01088 408 Gene3D - 205 264 - -
Aip06g01088 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Aip06g01088 408 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 260 IPR006447 GO:0003677
Aip06g01088 408 MobiDBLite consensus disorder prediction 336 408 - -
Aip06g01088 408 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Aip06g01088 408 MobiDBLite consensus disorder prediction 162 209 - -
Aip06g01088 408 MobiDBLite consensus disorder prediction 348 370 - -
Aip06g01088 408 MobiDBLite consensus disorder prediction 1 119 - -
Aip06g01088 408 Coils Coil 294 314 - -
Aip06g01088 408 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 408 IPR044848 GO:0003700
Aip06g01088 408 MobiDBLite consensus disorder prediction 27 105 - -
Aip06g01088 408 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 408 - -
Aip06g01088 408 MobiDBLite consensus disorder prediction 179 208 - -
Aip06g01088 408 Pfam MYB-CC type transfactor, LHEQLE motif 293 337 IPR025756 -
Aip06g01088 408 SUPERFAMILY Homeodomain-like 204 260 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01088 Aip-Chr6 16020842 16024908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01088 31 353 G2-like Transcription Factor Family AT3G04450 46.176 1.55e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip06g01088 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01088 - - gmx:100803267 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01088 06 16020842 16024908 Aip09g01921 09 58962499 58967079 ECH
Aip06g01088 06 16020842 16024908 Aip06g01088 06 16020842 16024908 ECH
Aip06g01088 06 16020842 16024908 Aip02g01060 02 19589920 19595583 PCT