Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01085 ATGGCTCCCAATCCAAGAGTTGTTCAGGCCTTTAATGCTATGAAGGCATTAGGAATTTCAGCTGAAGAGGTGAAGCCGGTGTTGGCAGAGTTGTTAAGAGTCTACGATAAAAATTGGGAACTTATTGAAGAGGACAATTATCGGACACTTGTAGATGCATACTTTGACTTCAAAGAAGATAAGGGAACAGATGCTAAGAAAAAAGTGTCTGTCAATTTTCATGCTCGAGAAAGACCAAAACAGAAGCTGCACTTGATAGATGATGATGATGATGATAACCAGGTTTTGTCAACAACAAACAAGTCGAGCCAAAAGTTATCCATTGCAGATAGGAAAACACCTCCAGGTAATTCTTCACAAGAAATCATTGAGCCATCTCAAGCTTCTAAGCAAGATAGCAAGCCGAGAACTAGTTCAGAAGCATCACATGCAAGGTTGATGAAGGTAGAAAGGGTTTCCAGTTCACCATGCAACGCACCTAAATATAGAAAAACGTATTACGACATAGCACCATCTTCAGGGCACTCTGTTGATTATGAGAAAGAGCTAGTGAAACCCAGAACTAAGAAACCAAAGTTACAGACTCAGCCTATTTCAACAAATCATGACGGATTATTTGATGCTTCCTCATCATGCAATAATAATGCCACAACTAGCACGGGAAATATCACTATTGCTTCTTCACCCCGTGGAGAAGTTAAATTGTCTTTAAACTGCAACTCTGCCTTGGCTCAACCGGACTTCTGTAATCCTAATTTGGATACTGTGATGAAGTTCATGGAGGAGAAGTACCTTAGCTCTTGCATGACTCAGGATCCTCAGTTTTCAATGGTGAAGCTACTAAATGGTTTATGCAGGAGCTATCTGATGTTGGGACATAAAAAACGTTCAAATTTCAGATCTTCTTCCAGCAACTTGGCAGTTACTCAAGATGAAAGGAGTTCCTCTCAGTTTATCAATGACATAACAAGAGGTTCAGAAAAGGTGAAAATCCCATTAATAGATGAAAATGGCAGTGAGGACTTGCCAAAATTTAATTATATACCGCAAAATATAATATACCAAAGTGCTAATGTAAATATTTCATTGGCTCGAATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCAACTGTCTTTCTGCTTCACTGCCTTGTGCATGTGCCCGTGAAACTGGTGGAGAGTTTGCTTACACTCCTGAAGGTGTGTTGAAAGAAGAGTTTCTTAAAGCTTGCATTTCCATGAAGAATGAACCTCAAGATCGTCATTTCGTGTATTGTCAAGAGTGCCCATTGGAGAAGTCTAAGAATGAGTTCATGCCCGAACAATGCAAAGGGCATATGGTTAGGAAGTTTATCAAAGAATGCTGGAGGAAATGTGGTTGTGACATGCGGTGTGGAAATCGAGTAGTACAAAGAGGTATAAGATGCAAATTGCAGGTGTACATGACTCGTGAGGGAAAGGGCTGGGGCCTTAGAACACTTGAGGATTTGCCGAAGGGTACTTTTGTATGTGAATACATTGGGGAAATATTAACCAATACAGAGTTATACGAAAGGAATGTGCACAGCAGTTGCAGCAATGACAGACACACATATCCCGTAACTCTTGATGCAGACTGGGGATCAGAAGGGGTCTTGAAAGATGAGGAAGCGCTTTGTTTAGATGCAACATATAATGGAAATGTTGGAAGGTTTATCAATCACAGATGCTTTGATGCAAATCTCATTGACATTCCTGTTGAAGTGGAGACTCCTGATCACCACTATTACCATCTTGCTTTCTTTACCACCCGAGATGTGAGAGCCAATGAGGAGTTGACGTGGGATTATGGTATTGACTTTGATGATCATGACCATCCTATTAAAGCATTTCAATGTTCTTGTGGAAGCGCTTTCTGCGGTGATAAGAAGAGAAAAGGTAACTCGATAGACAGATAA 1941 0.406 MAPNPRVVQAFNAMKALGISAEEVKPVLAELLRVYDKNWELIEEDNYRTLVDAYFDFKEDKGTDAKKKVSVNFHARERPKQKLHLIDDDDDDNQVLSTTNKSSQKLSIADRKTPPGNSSQEIIEPSQASKQDSKPRTSSEASHARLMKVERVSSSPCNAPKYRKTYYDIAPSSGHSVDYEKELVKPRTKKPKLQTQPISTNHDGLFDASSSCNNNATTSTGNITIASSPRGEVKLSLNCNSALAQPDFCNPNLDTVMKFMEEKYLSSCMTQDPQFSMVKLLNGLCRSYLMLGHKKRSNFRSSSSNLAVTQDERSSSQFINDITRGSEKVKIPLIDENGSEDLPKFNYIPQNIIYQSANVNISLARISDEGCCSDCSGNCLSASLPCACARETGGEFAYTPEGVLKEEFLKACISMKNEPQDRHFVYCQECPLEKSKNEFMPEQCKGHMVRKFIKECWRKCGCDMRCGNRVVQRGIRCKLQVYMTREGKGWGLRTLEDLPKGTFVCEYIGEILTNTELYERNVHSSCSNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVGRFINHRCFDANLIDIPVEVETPDHHYYHLAFFTTRDVRANEELTWDYGIDFDDHDHPIKAFQCSCGSAFCGDKKRKGNSIDR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01085 646 SMART set_7 477 618 IPR001214 GO:0005515
Aip06g01085 646 ProSiteProfiles SET domain profile. 477 612 IPR001214 GO:0005515
Aip06g01085 646 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 643 - -
Aip06g01085 646 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 640 IPR025776 -
Aip06g01085 646 Gene3D SET domain 322 637 IPR046341 -
Aip06g01085 646 Gene3D - 1 60 IPR043017 -
Aip06g01085 646 SMART preset_2 319 461 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip06g01085 646 MobiDBLite consensus disorder prediction 96 135 - -
Aip06g01085 646 MobiDBLite consensus disorder prediction 87 152 - -
Aip06g01085 646 MobiDBLite consensus disorder prediction 185 205 - -
Aip06g01085 646 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 643 - -
Aip06g01085 646 CDD SET_SETDB-like 343 612 - -
Aip06g01085 646 ProSiteProfiles Pre-SET domain profile. 375 474 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip06g01085 646 SUPERFAMILY SET domain 329 634 IPR046341 -
Aip06g01085 646 Pfam SET domain 489 612 IPR001214 GO:0005515
Aip06g01085 646 Pfam Pre-SET motif 322 469 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip06g01085 646 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01085 Aip-Chr6 16001607 16009288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01085 453 612 C2H2 Transcription Factor Family AT2G23740 44.099 1.35e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip06g01085 Pre-SET 5.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01085 - - gsj:114402909 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01085 06 16001607 16009288 Aip09g01926 09 59245515 59261093 PCT