Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01080 ATGACTTCATCATCTCCCGCTTCATTTTCTTTTCCGCCTCCTTTGCCGCTCTGCTTCATATTACACCGTCGTCTTCGACCGCGTCCTTGGCCCTTCCCCTTTCTCTGGAACTCACTCATCGGAGCCCACACCAAAGGAAGTTACTTTCTCGACGCCCTCTGTACTTTTATTCGCATGAAGGCACATGGGTCTCTTCCCGATAGGTACACTTACTCTTCTTTGATTAAGGCCTGTTCAAGAATGTGCAGATCCTGCGAAGGAAAATTGCTCCATGGCTCGGCGTTGAGGTGTGGGGTTGAAGGTGATATGTTTGTTGGAACCTGTTTGGTCGATATGCATGGGAAATGTGGAAAGATTGGTGATGCTCGTAAGGTGTTTGATGGAATGTCTAAGAAGAATGTAGTTTCATGGACGGCTATGGTGATTGGCTATGTGAAGGTTGGGGATATGGTGGAGGCATGTAAAGCATACGGGATTGTCTTGGACTTTGGAGATGGTGTCAGTCACACAATTCCTATCTATGAAGGTTATGCTCTTCCGCATGCAATCTTGCGTTTGGATCTTGCAGGGCGTGATCTCACCGATGCCTTGATGAAGATCTTGACTGAGCGTGGATACTCTTTCACGACATCAGCTGAGCGTGAAATTGTGAGAGACATGAAGGAGAAGCTAGCTTATATTGCTCTTGATTATGAGCAAGAGCTAGACACTGCGAAGACTAGCTCAGCTGTTGAAAAGAGTTATGAGCTACCAGATGGACAGGTTATCACAATAGGAGCTGAAAGATTTCGATGCCTTGAAGTTCTCTTCCAGCCATCCATGATTGGGATGGAATCTCCTGGAATCCATGAAACCACATATAATTCGATCATGAAGTGTGATGTTGATATTAGGAAGGATCTATATGGTAACATTGTCTTGAGTGGTGGTTCCATTATGTTCCCAGGCATTGCTGACAGGATGAGCAAGGAGATTACAGCATTGGCACCGAGTAGCATAAAAATTAAGGTTGTAGCACCACCAGAGAGGAAGTACATTGTTTGGATTGGGGACTCCATTTTGGCATCCCTTAGAACATTCCAACAGGCACCGGAGACGAGTGGAGACTTTAGAGACCCGCGGCGGCTGTGGAGGGCTCCGAAGAGGGTTGAAAGGCGAGGCGTGTCAGTTCTCCAGCAACACGCAGTGGGCGTGTTGCCTGCGAATCAAGCAGGTTTTGCAGAGGTTCCGTGCCTTCCTAATGTGCTGCAGCAACACGAAGTGGGCGTGTTGGAGGCTGTCTCCATGCAGGGGACAGCTCCTCCACCCCGTAGCCCTCCATCGTCGCCGCGGTTCACAGGTCGTCAGCGCCGCTGCCGTCGCCAAGTCCTCAGCACGGCCGCTTCAACCTCTTCCCCGTGTCCGGAACCCAGTCACTCGGCAGATCCTCTTCGTCTTCGCTGGAAGCTCGAACCCAGAACACAAGTACTTGTAGCTTTGTCTGGAACCCACACTCTTGGAAGTAAAGGTTTTGGAAGTCCAACTTCTTTTGACAATGCATATTATAAGATTCTTTTGGAGATTCCTTGGGCAAATTCAGGTGGCATGTCAAGTATGATTGGCCTTCCTTCAGATCTCAAATGCCGGTTTTGTTCTCAAATACTTCAATATTAG 1653 0.4846 MTSSSPASFSFPPPLPLCFILHRRLRPRPWPFPFLWNSLIGAHTKGSYFLDALCTFIRMKAHGSLPDRYTYSSLIKACSRMCRSCEGKLLHGSALRCGVEGDMFVGTCLVDMHGKCGKIGDARKVFDGMSKKNVVSWTAMVIGYVKVGDMVEACKAYGIVLDFGDGVSHTIPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELDTAKTSSAVEKSYELPDGQVITIGAERFRCLEVLFQPSMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSIMFPGIADRMSKEITALAPSSIKIKVVAPPERKYIVWIGDSILASLRTFQQAPETSGDFRDPRRLWRAPKRVERRGVSVLQQHAVGVLPANQAGFAEVPCLPNVLQQHEVGVLEAVSMQGTAPPPRSPPSSPRFTGRQRRCRRQVLSTAASTSSPCPEPSHSADPLRLRWKLEPRTQVLVALSGTHTLGSKGFGSPTSFDNAYYKILLEIPWANSGGMSSMIGLPSDLKCRFCSQILQY 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01080 550 PRINTS Actin signature 244 260 IPR004000 -
Aip06g01080 550 PRINTS Actin signature 148 167 IPR004000 -
Aip06g01080 550 Pfam PPR repeat 107 134 IPR002885 -
Aip06g01080 550 Pfam PPR repeat 135 157 IPR002885 -
Aip06g01080 550 PANTHER ACTIN-2 136 363 - -
Aip06g01080 550 SUPERFAMILY Heme-dependent peroxidases 458 539 IPR010255 GO:0004601|GO:0006979|GO:0020037
Aip06g01080 550 SUPERFAMILY Actin-like ATPase domain 158 370 IPR043129 -
Aip06g01080 550 MobiDBLite consensus disorder prediction 452 470 - -
Aip06g01080 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 136 IPR002885 -
Aip06g01080 550 Pfam Actin 146 363 IPR004000 -
Aip06g01080 550 SMART actin_3 75 388 IPR004000 -
Aip06g01080 550 Gene3D Tetratricopeptide repeat domain 28 132 IPR011990 GO:0005515
Aip06g01080 550 MobiDBLite consensus disorder prediction 429 475 - -
Aip06g01080 550 Pfam PPR repeat family 35 79 IPR002885 -
Aip06g01080 550 TIGRFAM PPR: pentatricopeptide repeat domain 107 134 IPR002885 -
Aip06g01080 550 PANTHER ACTIN 136 363 IPR004000 -
Aip06g01080 550 Gene3D Actin; Chain A, domain 4 190 276 - -
Aip06g01080 550 Gene3D - 158 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01080 Aip-Chr6 15860404 15864349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01080 139 362 Cytoskeleton Gene Families AT5G09810 84.375 3.05e-131 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01080 K10355 - gmx:100807341 387.497