Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01043 ATGGAGGATGGATTATTGGTCCTCAAGAATGGATGGAAAGAGTTTGCTAGAGACAAGTGTTTGGAACAAGCTGATTTCTTGGTCTTTGAGTATGATGGCAACTCCAAGTTTCATGTGAAGATATTTTCCAAAAGTGGATGCAGAAAAGAAGCTGCAATTAGTGGGAAACTTAACCCCGTTATGATCTCGGATGATGAAGATTCTGATCTTCAGAATAGTAAAAGAAAGCATGAGCGTGGCCTTAAAAGGAAACTTTCACCAATCACGGCACTCAAATTAAACCAGAAATCTCACTCAAAAAAGGGAACTACTGTACGGAAATCCAAAAGAGTTAAGAATGGGGCAAATGGTAGCAACTGTGAGAGCAAGGCATCTGGTCTTGTGAAGTTCGTTCCCCTGAAGGACCCTCATTTTGTGACACCTATGTCACACTGGAGAATGAAGAAAATGGAAATTCCTAGAAGAGTAACAAAGGAATTGAACATCAGCCTAAAATCAGGGATTATGCTGCGAGACGAGAATGACAAGCTATGGCCAGTGAAGATCGTCACCGGGGATCGCGGACGCTGCTATTTCGCAAAAGGGTGGTCTAGTTTCTGGAAGGCTAAAAGTGTTGAAGAGGGCAACCTTTGTGATTTCAAGTTTGTTGTTGGCAAAGAGAATAGAGCTGAGGAACTGCTTGTGAGAGTACACTCACATTAA 702 0.4217 MEDGLLVLKNGWKEFARDKCLEQADFLVFEYDGNSKFHVKIFSKSGCRKEAAISGKLNPVMISDDEDSDLQNSKRKHERGLKRKLSPITALKLNQKSHSKKGTTVRKSKRVKNGANGSNCESKASGLVKFVPLKDPHFVTPMSHWRMKKMEIPRRVTKELNISLKSGIMLRDENDKLWPVKIVTGDRGRCYFAKGWSSFWKAKSVEEGNLCDFKFVVGKENRAEELLVRVHSH 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01043 233 ProSiteProfiles B3 DNA-binding domain profile. 135 233 IPR003340 GO:0003677
Aip06g01043 233 SUPERFAMILY DNA-binding pseudobarrel domain 134 216 IPR015300 -
Aip06g01043 233 MobiDBLite consensus disorder prediction 64 118 - -
Aip06g01043 233 Gene3D - 130 231 IPR015300 -
Aip06g01043 233 Gene3D - 2 47 IPR015300 -
Aip06g01043 233 SMART B3_2 138 224 IPR003340 GO:0003677
Aip06g01043 233 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500-LIKE ISOFORM X1 6 221 - -
Aip06g01043 233 Pfam B3 DNA binding domain 6 44 IPR003340 GO:0003677
Aip06g01043 233 Pfam B3 DNA binding domain 140 231 IPR003340 GO:0003677
Aip06g01043 233 PANTHER B3 DOMAIN-CONTAINING 6 221 - -
Aip06g01043 233 CDD B3_DNA 7 43 IPR003340 GO:0003677
Aip06g01043 233 CDD B3_DNA 136 232 IPR003340 GO:0003677
Aip06g01043 233 ProSiteProfiles B3 DNA-binding domain profile. 1 45 IPR003340 GO:0003677
Aip06g01043 233 SUPERFAMILY DNA-binding pseudobarrel domain 4 50 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01043 6 232 B3 DNA Binding Superfamily AT5G66980 31.873 2.36e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip06g01043 B3 2.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01043 - - ahf:112695440 463.381