Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01039 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCACTTCTTGTCAAGCATAAGCATGAGAAGAAAAAATATGTTCTGAAGAAGATTCGCCTTGCCCGTCAAACTGAGCGTTCCCGCAGGTCTGCACACCAGGAGATGGAGCTCATTTCCAAATTAAGAAATCCATTTATAGTAGAGTACAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATCATTATAGGTTATTGTGAAGGTGGAGATATGGCAGAAGCTATAAAGAAAGCTAACGGTGTCATGTTTTCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGACTACTTGCACGTGAACCATATTCTTCATCGTGATGTCAAGTGTTCCAATATATTCTTGACAAAAGATCATGATATACGTCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCGGATGATCTTACTTCCTCTGTTGTGGGAACACCTAGCTACATGTGCCCTGAGCTCCTTGCTGACATACCCTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGGCCTCGCTTAAGCCTGCGTTCAAAGCATTTGATATACAAGCACTGATTAACAAGATTAATAAGTCCATAGTGGCTCCACTGCCAACAAAATATTCTGGTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAACCCAGAGCTTAGGCCTAGTGCTGCAGAACTACTTGGGCATCCACATCTTCAACCTTATGTTCTTAAGATCCATCTCAAAATCAATAGCCCCAGTCGAAATACATTGCCAGGTCGTTGGCCAGAATCCGACTACATTAAGAAAACTAGACTTTTTAGCCTGGAAGATGAACCTGTTTCCATATATAGGGATAAGTGGAATACTTTCAGCAATGATCGGAACTTAAATCCTAGTATATCTGGAGCAGAGCAAGATTCTCATTGCTCTACTCTGGAAATAGATTGTACCCCTGATCATTTGAATGAAAGGTTAGCAGAACTGGAAGTTGAGGATAGCCGTGAAGTGAAGTCAATTCACAAGCCAGTTGTTTCTAGAACTTCTACCATTGGCAAGACTTCAAGACACACTTCACCAAAAGCTTCTTCTAACAAGAAGAAATCAACAGAACCTTCTAAGAATTATAAGGTGCTTCCTGCTTCTCACCATAACACCAAACAACCTATCCATGGTCAGAGTCGCAGAGTATCCCTGCCGATGCCAAGAAGTGGTGCCAATCGGCAGCTGTCTCACAGGCCTAGCATTGGCTTACTCGACCATTTAAATTCACCCAATGTTTCGGTTAACGCCCCCCGTATTGATAAAATAGCAGAATTTCCATTAGCATCATATGAAGATCAATTGTTTCCCATTGCTAGACCTTCATCAACTTCTGCGCAGGGATCCTGGGGCACCCCGCCCTGCGTCAATGATTCAACAATGGTAGACAAATGTACAATCGAGCTAGGTGATAGAGCCTACACCAGGCCAAAATCTACGGATTCTTGGCAGGGAATTAAGCGCAGCATTTTAAAGGATGATGAGGTTAAAAGTGGCTCATCCGATCAAAATGCAACTGCTGGTGCATCAAGTAACAACTCTTCAGACCTGCGGCGTCGACAGTTTGACCCTTCTTCATTCCAACAAAGGGCTGAAGCGTTAGAAGGCTTGCTTGAGTTTAGCGCAAGACTACTACAGCAAGAAAGGTACGACGAACTTGGAGTTTTATTAAAACCGTTTGGGCCCGAGAAGGTTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGCTTCAAAGACAATAGTGCCAACCGGGAACAATCGGTGTAA 1869 0.4275 MEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVMFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMASLKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHPHLQPYVLKIHLKINSPSRNTLPGRWPESDYIKKTRLFSLEDEPVSIYRDKWNTFSNDRNLNPSISGAEQDSHCSTLEIDCTPDHLNERLAELEVEDSREVKSIHKPVVSRTSTIGKTSRHTSPKASSNKKKSTEPSKNYKVLPASHHNTKQPIHGQSRRVSLPMPRSGANRQLSHRPSIGLLDHLNSPNVSVNAPRIDKIAEFPLASYEDQLFPIARPSSTSAQGSWGTPPCVNDSTMVDKCTIELGDRAYTRPKSTDSWQGIKRSILKDDEVKSGSSDQNATAGASSNNSSDLRRRQFDPSSFQQRAEALEGLLEFSARLLQQERYDELGVLLKPFGPEKVSPRETAIWLSKSFKDNSANREQSV 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01039 622 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Aip06g01039 622 CDD STKc_Nek 3 258 - -
Aip06g01039 622 MobiDBLite consensus disorder prediction 348 428 - -
Aip06g01039 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Aip06g01039 622 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g01039 622 PANTHER SERINE/THREONINE-KINASE NEK4 1 607 - -
Aip06g01039 622 SUPERFAMILY Protein kinase-like (PK-like) 1 306 IPR011009 -
Aip06g01039 622 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g01039 622 MobiDBLite consensus disorder prediction 527 558 - -
Aip06g01039 622 MobiDBLite consensus disorder prediction 533 558 - -
Aip06g01039 622 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g01039 622 MobiDBLite consensus disorder prediction 362 378 - -
Aip06g01039 622 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Aip06g01039 622 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Aip06g01039 622 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 607 - -
Aip06g01039 622 MobiDBLite consensus disorder prediction 394 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01039 Aip-Chr6 15041105 15045243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01039 10 289 MAP Kinase Kinase Kinase AT1G53570 30.333 4.27e-38 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Aip06g01039 Pkinase 1.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01039 K08857 - gmx:100796019 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01039 06 15041105 15045243 Aip06g01039 06 15041105 15045243 ECH