Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00988 ATGGCCAGCAGATTTTGGTTTGGAAAGAAGAAAAGTAGTAGCAGCCATGGTGCCGGTTCAGAAAAGAAGTTCTCATTGGACGATGCTTCTCTCGCCGCAAAACCCAGAAGGCGAACCAGCTTCTTGTTTTCTTCTCCTTCTCCACTGCAAGGGTCGAGGCACATTGAGAGGGATAATAGATCCTTAACCCCAACAAGATCTGAATATTCCGTATCAACAACACCACCACCCTTTCCCTTTCGACAACATCATCATCATGATGAAGATTCATTGCCTCCACCAGCCACTTGTTTAAGCTTCAAATGGAAAAATATCTTTAAGCCATGGAAGAAGAAGAATAATAATAATATAAGATCATCATCACCATCAACTACTAGGCCCTCTCCTCCTCCTCCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCACCGCCGCTGCCAAACCGAGGCCATGGCAACTTTAATTTTCCTCCGCTCATCGCTTTCAGATCCTTCCAAATTCGTCATGCAACCAACAATTTTAGCAGAGAGAATTTAATTGGAAGAGGTGGGTATGCTGATGTTTTCAAGGGTCGTTTGAATGGGGAAATGGTAGCTATAAAAAAATTGAACAAAGGGATTAATGCTGCAAATAAGAACTCGCCGTCGCCGTCCTCCTCGTCGTCGTCGACGTCATCATCGTCAAGCTTTCTGAAAGAGCTAAACATCATTGCCTACATCGACCATCCTAATACTGCAAAGCTTATTGGATACAGTTCAGAAAAGGAATTCTGCCTCGTCTTCCAACTTTCTCCACTTGGAAGTTTAGCTTCTATTCTCCATGCAAGAGGGCTGTTGTACTTGCATGATCATTGTCACAGGCGAATCATTCATAGAGATATTAAATCTGATAATATTCTGCTCACTAAAAATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTGCCACCAGATGCTGATCAGCAACATGTCACAAAATTTGAAGGCACATTTGGGTATTCTGCTCCTGAATATTTGACGCATGGAATAGTAGATGAGAAAACAGATGTTTATGCATTTGGGATCCTGTTGCTGGAGATTTTAACCGGGCGTAAGGCCTTGGATTATTTGCAACAAAGCATTTTGATATGGGCAAAGCCATTAATTGATGCTCATAATGTTAAGGAGCTTGTTGATCCATCACTTGGTGAAGATTATGACATAGAGCAGGTGGAACGTCTTCTTTTGACTGCTTCTCTCTGTGTTGAGCATTCTCCATTCTTGCGTCCTCGCATGGTTCAGACTATGGAATTGCTGAAACCTGAAGAAGATATAATCTTCGAATTTGAAAACGATGGAACTCCAAGGCGCGTTACTTGA 1389 0.4327 MASRFWFGKKKSSSSHGAGSEKKFSLDDASLAAKPRRRTSFLFSSPSPLQGSRHIERDNRSLTPTRSEYSVSTTPPPFPFRQHHHHDEDSLPPPATCLSFKWKNIFKPWKKKNNNNIRSSSPSTTRPSPPPPSSSSPPPPPPPPPPPPPPPPLPNRGHGNFNFPPLIAFRSFQIRHATNNFSRENLIGRGGYADVFKGRLNGEMVAIKKLNKGINAANKNSPSPSSSSSSTSSSSSFLKELNIIAYIDHPNTAKLIGYSSEKEFCLVFQLSPLGSLASILHARGLLYLHDHCHRRIIHRDIKSDNILLTKNFEPQICDFGLAKWLPPDADQQHVTKFEGTFGYSAPEYLTHGIVDEKTDVYAFGILLLEILTGRKALDYLQQSILIWAKPLIDAHNVKELVDPSLGEDYDIEQVERLLLTASLCVEHSPFLRPRMVQTMELLKPEEDIIFEFENDGTPRRVT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00988 462 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524
Aip06g00988 462 ProSiteProfiles Protein kinase domain profile. 181 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g00988 462 MobiDBLite consensus disorder prediction 1 92 - -
Aip06g00988 462 SUPERFAMILY Protein kinase-like (PK-like) 160 442 IPR011009 -
Aip06g00988 462 Gene3D Transferase(Phosphotransferase) domain 1 273 454 - -
Aip06g00988 462 SMART serkin_6 181 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g00988 462 SUPERFAMILY Formin homology 2 domain (FH2 domain) 142 152 - -
Aip06g00988 462 PANTHER OS08G0249100 PROTEIN 164 459 - -
Aip06g00988 462 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 164 459 - -
Aip06g00988 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Aip06g00988 462 MobiDBLite consensus disorder prediction 15 34 - -
Aip06g00988 462 MobiDBLite consensus disorder prediction 111 160 - -
Aip06g00988 462 Gene3D Phosphorylase Kinase; domain 1 162 270 - -
Aip06g00988 462 Pfam Protein kinase domain 182 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g00988 462 MobiDBLite consensus disorder prediction 124 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00988 Aip-Chr6 14099150 14104645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00988 169 448 Trihelix Transcription Factor Family AT1G70460 38.387 2.74e-59 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Aip06g00988 Pkinase 1.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00988 - - aip:107646486 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00988 06 14099150 14104645 Aip09g01780 09 46316632 46329931 ECH
Aip06g00262 06 3061699 3063751 Aip06g00988 06 14099150 14104645 ECH
Aip02g02858 02 104747761 104752240 Aip06g00988 06 14099150 14104645 ECH
Aip01g02745 01 128843413 128846134 Aip06g00988 06 14099150 14104645 ECH
Aip04g00388 04 4666397 4669283 Aip06g00988 06 14099150 14104645 ECH
Aip06g00988 06 14099150 14104645 Aip06g00988 06 14099150 14104645 ECH
Aip06g00988 06 14099150 14104645 Aip09g01780 09 46316632 46329931 PCT