Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00978 ATGTGCTTGCCTGAGTCAGAGAGAGACATGGCTCTGGAAGCTGTGTTGTATACTAATAACATTCAACAACCACTCCCTTCTTCTTATGCAATCAACGACACCAACAAGGACTTGGACTTTTTCAACTTCAACAATGAAGAGGACCAACACCAATTCATCGATACTGGCCTACACTATTTACTGTCACCGCCACCGCCGCCGCCGGAAGAAACAGAAACAACCATGGATACCACATCAACTTGTTCTGAGCGTCCCAAGAGAAGGAGAGGAAAGACAAGAAAGAACAAGGAGGAGATCGAGAACCAAAGAATGACTCACATTGCCGTCGAACGTAACCGACGGAAACAAATGAATGATTACCTCTCTCTCCTTCGCAATCTCATGCCAGATTCTTACGTACAAAGGGGCGATCAAGCGTCCATAATAGGGGGTGCTATTAACTATGTGAAGGTGCTTGAGCAGAAACTGCAGTTTCTTGCTGCTCACAAAGAAATTACTACTACTACTACCGATGAAGATGAAGGATCTGATCTTACAAATAACAAAACTGGCACCATGCCTTTTTCCGAGTTCTTCGGCTTCCCACAAGTGACAGGGAATGCTGATATTGAAGTAACAATGGTGGAAAGCCATGCAAATCTGAAAATAAGGTCAAAGAAAAAGCCCAAGCAGCTCTTGAAGATGGTGTCTAATTTGCAAGCCATGCGTCTCACAATCTTGCATCTTAATGTCACCACCACTAACAATGATATTGTCCTCTATTCTCTCAGCGTTAAGGTGGAAGACGATTGCAAGTTGGGATCAGTGGATGAGATAGCCACGGCTGTGTGCCAAATGATGGAAAACATTCAACATGAGTCTGTTGAATAA 870 0.4379 MCLPESERDMALEAVLYTNNIQQPLPSSYAINDTNKDLDFFNFNNEEDQHQFIDTGLHYLLSPPPPPPEETETTMDTTSTCSERPKRRRGKTRKNKEEIENQRMTHIAVERNRRKQMNDYLSLLRNLMPDSYVQRGDQASIIGGAINYVKVLEQKLQFLAAHKEITTTTTDEDEGSDLTNNKTGTMPFSEFFGFPQVTGNADIEVTMVESHANLKIRSKKKPKQLLKMVSNLQAMRLTILHLNVTTTNNDIVLYSLSVKVEDDCKLGSVDEIATAVCQMMENIQHESVE 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00978 289 SMART finulus 107 158 IPR011598 GO:0046983
Aip06g00978 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 101 166 IPR036638 GO:0046983
Aip06g00978 289 MobiDBLite consensus disorder prediction 63 97 - -
Aip06g00978 289 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 71 287 - -
Aip06g00978 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 152 IPR011598 GO:0046983
Aip06g00978 289 PANTHER MAX DIMERIZATION, MAD 71 287 - -
Aip06g00978 289 Pfam Helix-loop-helix DNA-binding domain 102 152 IPR011598 GO:0046983
Aip06g00978 289 Gene3D - 83 167 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00978 Aip-Chr6 13891413 13892941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00978 92 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 60.773 6.97e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g00978 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00978 - - aip:107645875 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00978 06 13891413 13892941 Aip06g00978 06 13891413 13892941 ECH
Aip06g00978 06 13891413 13892941 Aip09g01752 09 44074553 44076973 PCT