Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00970 ATGGATCATCAAGGGCATGGCCAAAACCCATCCATGGGGGTTGTCAGTAGTGGGGCTCAACTAACATATGGTTCCAATCCGTACCAGCCAAACCAAATGACTGGGGCACCAGGGTCAGTTGTTACATCGGTTGGGAACATGCAAAGCGGTCAACCTGCTGGAGCTCAACTGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAGCAACTTCAGCAACAACTACAGGCTTTTTGGGCAAATCAATACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGTCTCCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCGGCTGAGGCACCTGTCATATTTGCAAGGGCATGCGAAATGTTCATTTTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGAAGAACCCTTCAGAAAAATGATATTGCTGCTGCAATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCGATCCCAAGAGGAACAATGCCTGTTGCAGGGCCAGCTGATGCAATGCCTTACTGTTATATGCCGCCTCAACATGCACCCCAAGTTGGACCTGCAGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAATATGTACGCTCAGCAATCTCATCCCTACATGGCTCCACAAATGTGGCCGCAGCCACCAGACCAACGACAATCATCTCCGGATCATTAG 780 0.4667 MDHQGHGQNPSMGVVSSGAQLTYGSNPYQPNQMTGAPGSVVTSVGNMQSGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADAMPYCYMPPQHAPQVGPAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQSSPDH 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00970 259 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 259 - -
Aip06g00970 259 Gene3D Histone, subunit A 62 178 IPR009072 GO:0046982
Aip06g00970 259 SUPERFAMILY Histone-fold 69 172 IPR009072 GO:0046982
Aip06g00970 259 MobiDBLite consensus disorder prediction 1 37 - -
Aip06g00970 259 Pfam Core histone H2A/H2B/H3/H4 61 163 IPR007125 GO:0003677
Aip06g00970 259 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 259 - -
Aip06g00970 259 MobiDBLite consensus disorder prediction 9 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00970 Aip-Chr6 13695833 13698567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00970 1 246 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.158 2.31e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aip06g00970 CBFD_NFYB_HMF 5.7e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00970 K08066 - gmx:100527803 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00970 06 13695833 13698567 Aip06g00970 06 13695833 13698567 ECH
Aip06g00970 06 13695833 13698567 Aip09g01725 09 41985755 41986549 PCT