Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00948 ATGGATTTTGAGTATGTTGACTTTGGCATTTCAATTGAACAAATAAAGTTGATTTGTGCCAATGGTGTTGTTGTGCGGATGGAGCCTAAAGTAGATGATGGAGTTAACCAAGGTGGTGGAATTCAAGAGGATCGTAGCGGCGGAACACAGTACGAAACAAACGAGACACCGATTGGAGACGGTAGAAGTGATAGTTGTGATGAATGGGTAGAGGGAGAAGCCACTGAATATCGAGACGTGCTAATGCTGACTGAAGCCGATATGATTAGGAAGGTGTTCTACACGGACGAAGCCGCGTATGAGTTTTACAAGAGATACGGCAAATGCCACGGGTTCGGTATTCGCAAGGGTGATTCGGGAAAGGATGATAATGGCAAGGTGATTAGGAGGAGGTTTTTTTGCAACAAAGCAGGGCTGAGGCAGCGCAAACATTACGAGAGGCTTGACAGGAAGAAGGACCATAGATCGGAGATGCGCACAAACTGTGACGCAAAGCTTTCAATCTTATGGGATGATGTCAGCGAAATTTGGAGGGTTAGAAAAGTTATACTAGATCACAACCATGATTTAACTCCTATGAGGATGGTTCATATGATCAACAGCTTTAGAGACATGGATTGTTCAGCTAAGGCACAGATTAATGGCATGCAGGGACATGGTATTTCCACGTCGAAGATCCTAGGTTATATGGCAGGGCAAGCCGGGGGGTATTCTCTGCTGGGTTTCACAAAAAAGGATGCCTATAACTACATCGAGAAGACCAAGCGGGAGAAGATTGTTGATGGAGACGCTAGCGCCGCAATAATTTATTTAGAGGGAAAAGCAGTGTCGGATCCGATGTGCATGGCTAGGTACAATTTGACGGACAACAATATGTTAGCGAACTTGTTTTGGGCTGATGGTGGGAGCCGGGTTGATTACCAACACTTTGGTGATGTGCTTTCCTTTGATTCGACTTACAAGAAAAACAAATACAGGAGACCTTTGGTTATCTTTTCTGGCTCGAACAATCATAAGAAAACAAGCATATTTGGGTTTGGTTTAGTGTTGGATGAAAGCATTGGGTCATACACGTGGTTGCTTGAAAATTTCTTGGAGGTAATGTGCAACAAAAAGCCATCGGTGATTGTGACAGACGGTTGTGACTCAATGAGGGCAGCAATCAGGGAAGTGTTTCCGGAGGCCACACATAGGCTGTGTGCTTGGCATGTGGAGAAGAACGTGACTTCGAATGTGAAGGATGAAGGCTTAAGACAACTTTTCACTAGGTGGCTGTACTCAAATATGAAGATAGAAGAGTTTGAGGCAGAGTGGGACGCAGCTGTGGTTGAATACCGACTTCACGATAGTTACTGGGATAAGGAAACCTATGATAAGTGGAAAATGTGGGCAAATGCGTACCTGAAAGACAAATTCTACGCCGGGTTCCGCACTACTTCTCAATGTGAAGGGATTAATGCGAATATCAAAAAGTTTCTTAATTCAAGGCACAGTCTTCTTGAGTTGGTGCAGAATGTTGAGTTGATGGTACGAGAGTATCGGAATAACGAGTTAGAAGCCCACTTCAAGTCCATTAATGGCAAGCCAGTGATCACGACTTGCTTGGACCCGCTCGAGCGGTTTGCTGCCGATGTTTACACACGAGAGTTATTCTTGGACGTGAGGAGGGAAATTGTAGGTGTCGGTGCGGTTAACTTCGTCGCAAAGGTTCGCCGATCCACGACTATGGTGTACACAGTTGAAGACTATGGCATTCCGGGTAGGCCATTAACGTTACTCTATGATAGGGTTGTGAATAGGCTACAATGTCCTTGCCAATTTTGGTTGCGAAGCGGTTACCCGTGTCGACACATGTTTTTCGTTTTGAAGCATGAGCATACGAGGGAAATTCCATCAAGGTTGGTGCTGACTAGGTGGCGTAAGGACGCTAAATCATTGGAGAACTATGGTGAAGGAAGAGCTAATGAGTGCAGTGAACGGGGGTTTCTATTACGTCAGGGTGCACTGCACTCAACATCGCAGTGGTTTTCATTCGTAGCTGCACGTAGCCCGGGTTTGTTTAACACAGCGATGAGTGGCATACGAGCTTTATGCAAACAAATCGAGGCTGCATGCGATCAGAAGGGTCCGTCGGCAAAGGGAAGAGATACTCCCACTGTGAAGGATCCCGTGGTGGTAAAGACCAAAGGGGCTCTCCGGATTAAGAAAATGAGTGGTAGGAAGAGGCGTTGTAGCATGTGTCGGAAAGCAGGACACGCGAAGCGACACTGCACCGGCAAGCGGGGATTGAATGTGGAGGCAGACCCACAGGAGGATGGGAAGACAGCAGACTTGGGATCGGAAGGTTCCTCACCAACAGAAAATGCAAAGGGTCGATGTGACACATTGAAAGTGCTCTCACCTAAAGCGGGAGAAGCCTTTGCCGAGTCGGATGTGGAAGAATCTGGGTTCCGGCCAAAAGAGGGGGGTCAGAGTGGGCATATCCGTACCGAAGGTTGGGATTCTGTCCTCCCATTGTGCTATAACGACGACAACTGTGTGAAGATTGAAGAGCTGATGCATGACATAATCAGGGTTACCGAGAGGCTATCAAGTAATCGGAGACAAGTTTGA 2613 0.4669 MDFEYVDFGISIEQIKLICANGVVVRMEPKVDDGVNQGGGIQEDRSGGTQYETNETPIGDGRSDSCDEWVEGEATEYRDVLMLTEADMIRKVFYTDEAAYEFYKRYGKCHGFGIRKGDSGKDDNGKVIRRRFFCNKAGLRQRKHYERLDRKKDHRSEMRTNCDAKLSILWDDVSEIWRVRKVILDHNHDLTPMRMVHMINSFRDMDCSAKAQINGMQGHGISTSKILGYMAGQAGGYSLLGFTKKDAYNYIEKTKREKIVDGDASAAIIYLEGKAVSDPMCMARYNLTDNNMLANLFWADGGSRVDYQHFGDVLSFDSTYKKNKYRRPLVIFSGSNNHKKTSIFGFGLVLDESIGSYTWLLENFLEVMCNKKPSVIVTDGCDSMRAAIREVFPEATHRLCAWHVEKNVTSNVKDEGLRQLFTRWLYSNMKIEEFEAEWDAAVVEYRLHDSYWDKETYDKWKMWANAYLKDKFYAGFRTTSQCEGINANIKKFLNSRHSLLELVQNVELMVREYRNNELEAHFKSINGKPVITTCLDPLERFAADVYTRELFLDVRREIVGVGAVNFVAKVRRSTTMVYTVEDYGIPGRPLTLLYDRVVNRLQCPCQFWLRSGYPCRHMFFVLKHEHTREIPSRLVLTRWRKDAKSLENYGEGRANECSERGFLLRQGALHSTSQWFSFVAARSPGLFNTAMSGIRALCKQIEAACDQKGPSAKGRDTPTVKDPVVVKTKGALRIKKMSGRKRRCSMCRKAGHAKRHCTGKRGLNVEADPQEDGKTADLGSEGSSPTENAKGRCDTLKVLSPKAGEAFAESDVEESGFRPKEGGQSGHIRTEGWDSVLPLCYNDDNCVKIEELMHDIIRVTERLSSNRRQV 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00948 870 ProSiteProfiles Zinc finger SWIM-type profile. 594 626 IPR007527 GO:0008270
Aip06g00948 870 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 92 660 IPR031052 GO:0006355
Aip06g00948 870 MobiDBLite consensus disorder prediction 758 791 - -
Aip06g00948 870 MobiDBLite consensus disorder prediction 42 60 - -
Aip06g00948 870 MobiDBLite consensus disorder prediction 759 775 - -
Aip06g00948 870 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 92 660 - -
Aip06g00948 870 Pfam MULE transposase domain 313 407 IPR018289 -
Aip06g00948 870 Pfam FAR1 DNA-binding domain 101 191 IPR004330 -
Aip06g00948 870 MobiDBLite consensus disorder prediction 35 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00948 Aip-Chr6 13440434 13443394 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip06g00948 MULE 1.9e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00948 - - ahf:112758792 1735.7