Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00945 ATGAATTTTTCAAACGAACGAAAGAAGAAAATGACGGATTCGCAGTCCAATTCAGAGATTTTCAGTGTTCGGATTGTCTCCATCGACTATTACATGGCTCCGCCGATCCAAGGCGCCGATATCTGTTACAGCAGCTTCCACGGGGGAAAAGTGAAGGAGGTTCCTGTAATAAGAGTGTATGGTTCTACTCCTTCAGGCCAGAAGACTTGCTTGCACATTCACCGAGCCTTGCCTTATATGTATGTGCCATGTTCGGATATACCACTTCAACCAGACCAAGAAGGTGATGCATACACGAATAAGGTTGCTGCTTCTCTCGAGAAAGCCTTGCAGCTTAAAGGCAGTGCTGGTTCAACAAGGCAGCATGTGCATGGCTGCAGCCTTGTACGAGCAAGAAGATTCTATGGTTACCACTCGTTTGAGGAGTTATTTGTTAAGATATACCTATATTATCCGCAAGATGTCTCCCGTGCTGCTAATCTTCTCTTGGCTGGTGCTGTTCTTGACAAATGTTTACAACCTCATGAATCACATATTCCCTATATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTAACAAAGATGAAATTTCGCCATCCTGTACCAGACTCTTCTCACAAGAAATCAAGTATTTATAGCGAGCACATAATGGCAGACTCAGGTGCTGATGTATGTTTGGAGTCAAAGATGTGGATATCTTCCACTGTCCCATCTGATTGGATGTGGTCACCTGCCGATGACTTTGGTGCTTCATCAAACAATAAGCCTTACTGCCCTAAAAGGCAAAGCACATCTGAGCTTGAAGGAGATGCTTCTGTAGATGAGATTCTTAATCAGCAATTTATAATGTATTCATCTCTCTCACAAACATGCTCGGATGTGAAAATGGTTCAATCACTTGTACCTATATGGGAGGAACAGCAGAAAAGGACTGGAGTTAATGAGGCTACTATGCCTCCTGATCCTGGAAAACCACTTCCAGAAGATGTTATGAAGCTTCTTTCTGCTGGTATTGACTTTGAGAAAAGACTTATTGAATTGTGTAACATAGCTGGAACCACTGTGTCTTTAACTCCTTCTCAGAAAGAATTAAGAGAAACAGACATAATAGGCTCAGCATCACCACCATGTTCATTAAATGATGCCAAAATACACGAAGATGGGGGTGATAACAGCTTCAGTTTGTTGCCTGTGGACAAAATGCATTCATCTGAAATAATTGGATCGTCGGACATAAAGGCTGCAGAAAGGGAAGCCCAACATCTTCTCAAGTGGCTTGCAACTTCTCAAGCTGCAGAAGATATTAACTCTGATGATGAACTTGTTTGTGAAATGATGCTGAGTCCCCAGCTACCAGATGCAACGATTGATAAACTGCTGGAGAAAGTTAATATGCAATATGAGAGTGAGTCGCAAAAGGAATGTCAGGATATTCTAGATTCAGTTGATGATATGCTTGAGTTGAAGTTTTCTAAGCAAAAGCCTTCTTGTTCAATTGATCATGGTGATCCTATTGAAGTGTCAACTGAGAGTATAATACCCCAAGTTGATGGTTCAGCTGATGATGAATATTCAATTCCATGTGCTAGTTTGGCTGAAACCTCTTCTGCAGCAGAGAGAAATAGTGAATCCAGAAGGCTGTCTGAGTACCATGTCATGCACAGCACTGATACAGCCGTAGTTAGTAAAGATAAGAGGAGTAAGCAATGGGGGTCTTTGCCTTTTTCAGTGGCTGATAAGGTTAACTGCAAAGGAGAACAAGCTATAATGCAAGTGACTTGCCCATTTGAAAGTCAAAGTGGAGATTCTACTGATTCTGATAATGGGGTTAGAAAGAGTGCTCGTATTACAAGAAATGTGGGCAGAACTGTTTCAGAATCAAAACAACAGAGATTTGTTAACTGCTCTTTGCGGGACTTGATGAGGCGGAAGCGATCCTTTCGAGTTGAACAAACTGAATGCGATTCTGGGACAACTAAAAAGCTTGTTTTGGACAGGCATGAGGGATCAAATATCTGCCTTTGGAAAAAACGAATGGATTTGAGCACAATTCAAACCAACGAGGAAGAAACAAAACTCCTGAAAAATTGTGATCTTAAACTGAGCAATCATGATAATTTAGTGAGTCGGAAACTGCCACTTCCAGATGGTAAGGATAGTTTCTTACAGGATGATATGCAAAGCGATGAATGTTTTTCTGAAAATGAAATGGAGGCTCCAGAAGCAAGTGATCTGTTAAGGACTTCTGGAAATCAAGGTTCTTTAGTGTATATGCCAAATCCCTTTCCAGATGTTCAGTTAATGCGAACAGATACCGATTATAAAATCATAACTCCTGAGAGGTGTCAACAAACTTATTCTGCATCTTCAAGCAGTGTACAGAACTCATCCATTGATAATAAAGTGTCATGCAAGCCTAATTGCACGAATCAAGATTCTCATGGCAGCATATCTTTTGCACAAGAAAGCCAAATTCCAGCAATTTACACACGAGTGTTGCTTAATGAGAGAGTTGATAATAAAAAACATGGTGTAAATTTACTGGGTGAGAAGACTATTGTCTCAGAGTCTATTGATGATGACTTGAAGGATAAACACATGGAATTAACTGAAGTAAGTGCAGCTAAGGAAACCTGCTCAACTGACAAGAATCTTGAAAATCTTTTACCCTTGCCAACCATGCCTGATTCCCATTTACATTTGGATGAGGAAAGCTGTGATGAAATGTCAGGGAATGCTCTGGATGTTTTTCTTCCCATTTCCACAAAGGATTCCCAGAAAGAGATGAAGACTTGGAATAAATATGTTGCAATCAAAGCTCCTCGATCTCATGGGAAAAAGGATGTTGCTATCCACTATCAAAATGATGGCTCTCACGTATACGTGCTTACACCTAATATTTTGCCTCCGTCTGTAACCAGTGTGCAGAGATGGCTATCTCTAGATGAGAGAGATCACACAAGTCAAGAAACTGAAGTAGAGGCCAAGGATGTGCCTGAACACACTTCTGGACCTACTCTCCAGCCTAAGCTTTATGATGATAGTAGTGCAGAAAAGAAACCAGTCAAACCATCATGCATTAATGAAGGACAAACAGAAAGAGTGAAGGCAAGTGCAGATGGTTCACAGGATAATTCACAGATATCAGGCCCTATGAGGAAATCAAATTCTACCCCTCTGAGTCAAATTGGCTTTCGAGACCCTTCAAGTGTTGGATGTGGACAGCAATTGACATTACTCAGTATAGAGGTCCTTGCTGAATCAAGAGCAGACCTTTTACCTGACCCTCAGTTTGATGCTATCAACATTGTAGCTCTTGGTTTTCAGAATGATTGTGATTCTATTATTGAAGTTCTTGTTCTTTTGCATAATAAATTTGAACCTTGTCAGAGAAGTTTTGATGGCTTAGTAGGCTGCAAAGTGTTGGTCTTTTCTGATGAAAAGCACTTGTTAAAGGAATTTATAAATATTGTCTCTTCATCTGACCCTGATATTTTGATGGGCTGGGATATTCAAGGGTATTCTCTTGGTTTCCTGGCAGAAAGGGCTTCACGATTTGGTTTAGGATTACTTAACAGTTTGTCACGAACTCCATCTGATTCATCGGTTGCTTCTGAAGATGTGAAAATTTCCGGAAAAGGTATCTTGGAATTTGACGATCCTGATACTCCTAGTATAGATTGTTGTGTACAAGGAAGTTCAATAATTGAGGATGAATGGGGACGGACACATGCAAGTGGAGTTCATGTAGGTGGCAGAATTGTCCTTAATGTATGGCGGCTGATCCGCGGAGAAGTTAAGCTGAACTTATATTCGATTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAATTCCATTCTTTCACAACAAGGTGCTGACAAGATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTTGTAGAAAGAACAAAGCTGAACCTTGAGATCTTAAACCAACTTGATATGGTGAATCGGACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTTTCTGTTCTATCACGTGGTTCACAATATCGGGTTGAATCCATGTTATTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCTCTAGTGATGGAACCCGAGTCAGGATTTTATTCTGATCCTGTTGTTGTATTTGACTTTCAATCTTTATATCCATCTATGATAATTGCATACAACCTTTGCTTTTGTACGTGTCTTGGCAAAGTTGTAGCTTCGAAGGCTAACACGCTTGGGGTCAGTTCATTTTCGCCAGAGCAACATGTTCTTCAGTATTTGAAAGATCAAATTTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCGCAGAGGTGTGCTTCCCCGCTTATTGGAAGAGATCTTGTCAACCAGAATAATGGTGAAACAAGCAATTAAAAAGTTGGCTCCCTCAGAGCAAGTGCTTCAGCGGATATTTAATGCAAGGCAGCTGGCATTGAAACTCATATCCAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAGAGGGCGATCTCATTTGTAAATCTACATGAAAAGTGGAATGCTAGAGTTATTTACGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTATCAAAGAATCTTTCCAAATTGGGAGTGAGATTGCTTCTGCTATCACTGCTATGAATCCTAGTCCTGTTACCCTGAAGATGGAGAAAGTTTATCAACCTTGTTTCCTCCTGACAAAGAAGCGATATGTTGGCTACAGTTATGAAAGCCCTGAACAAATTGAACCTGTTTTTGATGCTAAAGGTATTGAGACAATCCGCAGGGACACGTGTGGTGCAGTTGCAAAGATAATGGAACAGTCTTTGAGATTATTTTTTCAGCATCAGGATTTATTGGAGGTCAAATGTTACTTGCAACGTCAGTGGAAGAGGATACTTTCTGGAAGATTCTCCCTGAAAGATTTCGTCTTTGCAAAGGAGGTTCGTCTGGGTACCTACAGTGGAAGGATCTCTTCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGAGATCTGATCGTAGGGCAGAACCACGATATGCTGAGAGAATACCTTATGTTGTAATCCACGGTGAGCCTGGAGCCCGCCTGTCTGATATGGTTGTGGATCCATTGGAAGTCTTGGCAATTGATTCTCCATTTAGAATAAATGATTTATATTACATTAACAAGCAAATAATACCAGCCTTGCAGCGTGTCTTTAGCCTTGTTGGCGCTGACCTGATCCAGTGGTTTTTAGAGATGCCCCGCCCCGTAAGGGAAGCATCTGTAAAGAATAAGTTCTCTTCAAATTTTCAGAGAACCAGAATTGATTATTACTATCTCTCGAAACATTGTATAGTATGTGGGCAGTTGGTCCAGGCTTCAGCACGTTTGTGTAGTCAATGCTCCAAAAATGAAGCAGCTGCTGCAACAGCAGTGATTAGTAAAACTTCTAAGTTGGAGCAAGAGATGCAACATCTTGTTGCTATATGTCACCACTGTGGCGGCGGTGATAGGCTTCTCGAAAGTGGGGTGAAGTGCACGTCCATTGCATGCACGGTGTTCTATGAGAGGCGGAAAGTTCAGAAAGAATTATTAGCTGCCACTGATGTCGCTGCAGAGAAAGGCTTCTATCCGAAATGCACGGTAGAATGGTTCTAA 5832 0.4138 MNFSNERKKKMTDSQSNSEIFSVRIVSIDYYMAPPIQGADICYSSFHGGKVKEVPVIRVYGSTPSGQKTCLHIHRALPYMYVPCSDIPLQPDQEGDAYTNKVAASLEKALQLKGSAGSTRQHVHGCSLVRARRFYGYHSFEELFVKIYLYYPQDVSRAANLLLAGAVLDKCLQPHESHIPYILQFLVDYNLYGMGHLHLTKMKFRHPVPDSSHKKSSIYSEHIMADSGADVCLESKMWISSTVPSDWMWSPADDFGASSNNKPYCPKRQSTSELEGDASVDEILNQQFIMYSSLSQTCSDVKMVQSLVPIWEEQQKRTGVNEATMPPDPGKPLPEDVMKLLSAGIDFEKRLIELCNIAGTTVSLTPSQKELRETDIIGSASPPCSLNDAKIHEDGGDNSFSLLPVDKMHSSEIIGSSDIKAAEREAQHLLKWLATSQAAEDINSDDELVCEMMLSPQLPDATIDKLLEKVNMQYESESQKECQDILDSVDDMLELKFSKQKPSCSIDHGDPIEVSTESIIPQVDGSADDEYSIPCASLAETSSAAERNSESRRLSEYHVMHSTDTAVVSKDKRSKQWGSLPFSVADKVNCKGEQAIMQVTCPFESQSGDSTDSDNGVRKSARITRNVGRTVSESKQQRFVNCSLRDLMRRKRSFRVEQTECDSGTTKKLVLDRHEGSNICLWKKRMDLSTIQTNEEETKLLKNCDLKLSNHDNLVSRKLPLPDGKDSFLQDDMQSDECFSENEMEAPEASDLLRTSGNQGSLVYMPNPFPDVQLMRTDTDYKIITPERCQQTYSASSSSVQNSSIDNKVSCKPNCTNQDSHGSISFAQESQIPAIYTRVLLNERVDNKKHGVNLLGEKTIVSESIDDDLKDKHMELTEVSAAKETCSTDKNLENLLPLPTMPDSHLHLDEESCDEMSGNALDVFLPISTKDSQKEMKTWNKYVAIKAPRSHGKKDVAIHYQNDGSHVYVLTPNILPPSVTSVQRWLSLDERDHTSQETEVEAKDVPEHTSGPTLQPKLYDDSSAEKKPVKPSCINEGQTERVKASADGSQDNSQISGPMRKSNSTPLSQIGFRDPSSVGCGQQLTLLSIEVLAESRADLLPDPQFDAINIVALGFQNDCDSIIEVLVLLHNKFEPCQRSFDGLVGCKVLVFSDEKHLLKEFINIVSSSDPDILMGWDIQGYSLGFLAERASRFGLGLLNSLSRTPSDSSVASEDVKISGKGILEFDDPDTPSIDCCVQGSSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSIEAVAEAVLRRKIPFFHNKVLTRWFSSGPGRARYRCIKYVVERTKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQYLKDQILLTPNGVMFVPSKVRRGVLPRLLEEILSTRIMVKQAIKKLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLERAISFVNLHEKWNARVIYGDTDSMFVLLKGRTIKESFQIGSEIASAITAMNPSPVTLKMEKVYQPCFLLTKKRYVGYSYESPEQIEPVFDAKGIETIRRDTCGAVAKIMEQSLRLFFQHQDLLEVKCYLQRQWKRILSGRFSLKDFVFAKEVRLGTYSGRISSLPPAAIVATKAMRSDRRAEPRYAERIPYVVIHGEPGARLSDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFSLVGADLIQWFLEMPRPVREASVKNKFSSNFQRTRIDYYYLSKHCIVCGQLVQASARLCSQCSKNEAAAATAVISKTSKLEQEMQHLVAICHHCGGGDRLLESGVKCTSIACTVFYERRKVQKELLAATDVAAEKGFYPKCTVEWF 1943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00945 1943 Gene3D DNA Polymerase, chain B, domain 1 40 206 - -
Aip06g00945 1943 MobiDBLite consensus disorder prediction 1038 1074 - -
Aip06g00945 1943 CDD DNA_polB_zeta_exo 1081 1331 - -
Aip06g00945 1943 MobiDBLite consensus disorder prediction 991 1006 - -
Aip06g00945 1943 PRINTS DNA-directed DNA-polymerase family B signature 1409 1422 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aip06g00945 1943 PRINTS DNA-directed DNA-polymerase family B signature 1518 1530 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aip06g00945 1943 PRINTS DNA-directed DNA-polymerase family B signature 1574 1582 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aip06g00945 1943 Pfam C4-type zinc-finger of DNA polymerase delta 1842 1915 IPR025687 -
Aip06g00945 1943 Pfam DNA polymerase family B, exonuclease domain 1142 1205 IPR006133 -
Aip06g00945 1943 Pfam DNA polymerase family B, exonuclease domain 64 208 IPR006133 -
Aip06g00945 1943 SUPERFAMILY Ribonuclease H-like 37 1355 IPR012337 -
Aip06g00945 1943 Pfam DNA polymerase family B 1350 1798 IPR006134 GO:0000166|GO:0003677
Aip06g00945 1943 SUPERFAMILY DNA/RNA polymerases 1396 1808 IPR043502 -
Aip06g00945 1943 Gene3D Helix hairpin bin 1475 1535 - -
Aip06g00945 1943 MobiDBLite consensus disorder prediction 991 1074 - -
Aip06g00945 1943 ProSitePatterns DNA polymerase family B signature. 1576 1584 IPR017964 GO:0000166|GO:0003676
Aip06g00945 1943 SMART polmehr3 1082 1588 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aip06g00945 1943 CDD POLBc_zeta 1357 1804 - -
Aip06g00945 1943 Gene3D - 1114 1392 IPR036397 GO:0003676
Aip06g00945 1943 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 17 1936 IPR030559 GO:0006281|GO:0016035|GO:0019985
Aip06g00945 1943 Gene3D Palm domain of DNA polymerase 1395 1640 IPR023211 -
Aip06g00945 1943 Gene3D - 1651 1812 IPR042087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00945 Aip-Chr6 13330340 13343057 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00945 49 205 Core DNA Replication Machinery Family AT5G63960 25.309 2.15e-09 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00945 K02350 - gmx:100777934 2799.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00945 06 13330340 13343057 Aip06g00945 06 13330340 13343057 ECH