Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00939 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCCACAGATAACACTAACAGCAGAGTAGTAGAAGGAGGAGATGCATCACTATTGTTACTTAATAAAAATAAACAGCAATCAGAGTCAGAGATACTTGGTGGTGGTAACTTCCATAGTCCAAATTCTCATTCTTCAACCATCACTACTAATAACAGCAGCAGCAATGCTTCCAACGCAAATTCACAACCACAACCACCACCGCCTCCTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTCTATCGCCAAACACGCTGGTGACTACAAACCGAGAAGCAGCAGCGAAGTGCGGAAGAGCACTGGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGAAAGCACGGCGACAAGAAGTGGAAATGTGACAAATGCAACAAGAAATACGCCGTTCAATCTGACTGGAAAGCTCATTCCAAAATCTGTGGTACCAAAGAATACAAATGTGACTGCGGCACCGTCTTTTCCAGAAGAGATAGCTTCATAACCCACAGAGCTTTCTGTGACGCACTGGCTGATGAGAATAACAAAGTGAACAATGAAGGAGGAGTACTAGGACATTTTCCAAAGATAGGTTCCAACTTATTGCAACCATTAATCCCAAACCTAGTTGCATCATTACCAATCACTCGCAATAACAGTAGTAGTAATAATAGTAACCCACACATTATTTCTACTTCCGAATTCAAGCAGCATCCATCATTCCCTCATGAACTCGTGCCAATGTCAATGCCTGAACAGAAACCCTTCATCAACACCACCACAACCACCAACAACCACCTAATAAACCCTTCATCACTGCCCTCTCTTCAACTGAACTCACCACATTCTCCGCTAAACATGTTCGATGAGAGTGGTGGGGTCCATTTAGCTGCAGGGTTACCTCACATGTCCGCCACGGCATTGCTTCAAAAAGCTGCACAAATGGGTGCAACAAGCGTGAGCAATAATAACAATAACACTAGCATGGCACCCCCGTCATTTGCTTCTTCCAATAATGGGATCATCATGGAACACTTCATGCACAATGCTCATCCTCAACACGATAATATTTCATCGTCTCAGTTTAATAATAACAATAATTTCAACGGGAGCGTTGGAATGAACGGTGTGGAAATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTAGCCAAGATCATTGATCAGAACAACAGAAGCAGTGGATTCAGTATCCCCCCGGTGAGTGGTAGGAGTAGTAGCACCATTAATATTGGTGGAGCTAAGGGAAGTGAGGATGTAATGACTCTCGACTTTCTGGGAATCGGAGCGGGAGGTGCTGGTGGTGGTGGCGGCGCCGGAGATGGTGGTGCCCATGGATACTTTGGTATTGGTCCCTTAGCGTAA 1425 0.4456 MSNITSCDSGSFSTDNTNSRVVEGGDASLLLLNKNKQQSESEILGGGNFHSPNSHSSTITTNNSSSNASNANSQPQPPPPPKKKRSLPGNPDPSAEVIALSPNTLVTTNREAAAKCGRALGDLTGIKKHFSRKHGDKKWKCDKCNKKYAVQSDWKAHSKICGTKEYKCDCGTVFSRRDSFITHRAFCDALADENNKVNNEGGVLGHFPKIGSNLLQPLIPNLVASLPITRNNSSSNNSNPHIISTSEFKQHPSFPHELVPMSMPEQKPFINTTTTTNNHLINPSSLPSLQLNSPHSPLNMFDESGGVHLAAGLPHMSATALLQKAAQMGATSVSNNNNNTSMAPPSFASSNNGIIMEHFMHNAHPQHDNISSSQFNNNNNFNGSVGMNGVEMFNAILDQSKALAKIIDQNNRSSGFSIPPVSGRSSSTINIGGAKGSEDVMTLDFLGIGAGGAGGGGGAGDGGAHGYFGIGPLA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00939 474 Gene3D Classic Zinc Finger 112 197 - -
Aip06g00939 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 54 110 - -
Aip06g00939 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 117 450 - -
Aip06g00939 474 SUPERFAMILY beta-beta-alpha zinc fingers 135 183 IPR036236 -
Aip06g00939 474 MobiDBLite consensus disorder prediction 73 87 - -
Aip06g00939 474 MobiDBLite consensus disorder prediction 1 21 - -
Aip06g00939 474 MobiDBLite consensus disorder prediction 41 72 - -
Aip06g00939 474 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 54 110 - -
Aip06g00939 474 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 117 450 - -
Aip06g00939 474 MobiDBLite consensus disorder prediction 41 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00939 Aip-Chr6 13160674 13163947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00939 56 196 IDZ Gene Family AT3G50700 55.026 3.89e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip06g00939 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00939 - - gmx:100813556 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00939 06 13160674 13163947 Aip09g01671 09 38355801 38364161 PCT