Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00906 ATGGCAGGGGGAGACCCAGAGAGGAATAAAAGACTAGTCCTTATAGGAGTCTCAACCTTCTTATTGGTGGCCATGGTGGTGGCCGTCACACTCAGCGTCACCTTGAACAAGAACTCCAGTGATGGTTCAAAGGCAGAAGACCAGAGCCATGTTGCATCGTCGGTGAAAGCGGTGAAGACCCTCTGCGCTCCTACAGATTACAGAGAGGAATGCGAGCAGTCATTGTCCGCAGAAGCCGGCAACACCACGGATCCAAGGGAACTCATCAAGATCGCATTCAACATCACCATCAAGAGGATCACCGATGGCCTTGAGCAGACCCAGATGCTTCAGGAATTGGAGAACGACCCCATGGCCAAGCAGGCTCTCGACTCTTGCAAGCAACTCATGGACCTCTCCATTGACGAGTTCAACAGGTCCCTCGAGAAGCTTGGAAGGTTCGACCTCAACAACATCGACAACATTCTCAGCAGCTTGAAGGTCTGGCTCAGCGGTGCCATCACCTACCAGGAGACCTGCCTTGACGGCTTCGAGAACACCACCAGCAGCGCCGGCGAGCAGATGAAGGAATTGTTGAGGACCGCCATGCACATGAGCAGCAATGGCCTCGCCATCATCACCGAGCTCGACAAGACCATGAGCGCCATGCATTTCCCCTCCACCCAGCCCGCCGGAGCCCGCCGCCTGATGTCCGAGGACGATGAGGACCAGGACCAGGACCAGGAGCTCCCCGAGTGGATCGAGGACCGCATCGCCGTCCGCAAGCTTATGGCTACTGTTGGTGGCGGAAGAAGGTTCAAGGCTGACGTGACAGTTGCAAAGGATGGTTCTGGTGATTTCCAGACCATCACAGAAGCCTTGAGGAAGGTTCCTTCAAATAACAAGAAGCCCTTCATCATCCACATCAAGGAGGGTGTCTACCAGGAGTACCTTGAAGTCCCCAGGAACTTGACCCACGTTGTCTTCATCGGCGATGGTGGTCACAAGACCCGCATCACCGGCAATAAGAACTTCATCGATGGCGTTAACACTTACAAGACCGCCACCGTTGCTGTTCAAGGAGACTACTTCGTTGCCATGGGAGTAGGATTCGAGAACTCAGCCGGAGCAGCGAAGCACCAGGCAGTGGCTCTGAGGGTGCAAGCAGACAAATCCATCTTCTACAAGTGCAGAATGGACGGTTACCAAGACACACTGTACGCCCACACCATGCGTCAGTTCTACAGAGACTGCGTGATCTCAGGCACCATCGATTTCGTGTTCGGAGATGCAGTGTCAGTCTTCCAGAACTGCACCTTCGAGGTGAGGAAGCCATTGGCAAACCAGCAGTGCATTGTGACAGCACAAGGCAGGAAGGAGAGGTACCAGCCAACAGGAATTGTGATCCAGGGTGGTTCCATCGTGTCAGACCCAGAATACTTCCCAGTTAGGTTCACCAACAAGGCCTTCCTTGCTCGTCCATGGAAGAATTACTCAAGGACCGTCTTCTTGGATACCTACCTTGATGACTTGGTCACCCCCGCCGGTTACATGCCATGGCAAACAGCCGAGGGACTCTCCGGCATGGACACTTGCTACTACGCTGAGTTCGGCAACCGTGGTCCCGGAGCTGACAACACCAACCGTGTCAACTGGCTTGGTATCAAGAAAAACTTCACAGCACAAGCAGCAAACATGTACAATCCAACCAACTTCTTCCGTGGAGATGAATGGATCAAGGTTACCAAGATTCCCTACAACCCTGGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTAGAACCAGCCCCTCCTCCTCCTCCCCTGCTCCTGCTTCTTCTCCGACCGCGGCCGCCACAACCACTGCCACCTCCTCCCCTGCTCCTTCCCCTTCTAATCTCTAA 1959 0.5151 MAGGDPERNKRLVLIGVSTFLLVAMVVAVTLSVTLNKNSSDGSKAEDQSHVASSVKAVKTLCAPTDYREECEQSLSAEAGNTTDPRELIKIAFNITIKRITDGLEQTQMLQELENDPMAKQALDSCKQLMDLSIDEFNRSLEKLGRFDLNNIDNILSSLKVWLSGAITYQETCLDGFENTTSSAGEQMKELLRTAMHMSSNGLAIITELDKTMSAMHFPSTQPAGARRLMSEDDEDQDQDQELPEWIEDRIAVRKLMATVGGGRRFKADVTVAKDGSGDFQTITEALRKVPSNNKKPFIIHIKEGVYQEYLEVPRNLTHVVFIGDGGHKTRITGNKNFIDGVNTYKTATVAVQGDYFVAMGVGFENSAGAAKHQAVALRVQADKSIFYKCRMDGYQDTLYAHTMRQFYRDCVISGTIDFVFGDAVSVFQNCTFEVRKPLANQQCIVTAQGRKERYQPTGIVIQGGSIVSDPEYFPVRFTNKAFLARPWKNYSRTVFLDTYLDDLVTPAGYMPWQTAEGLSGMDTCYYAEFGNRGPGADNTNRVNWLGIKKNFTAQAANMYNPTNFFRGDEWIKVTKIPYNPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRTSPSSSSPAPASSPTAAATTTATSSPAPSPSNL 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00906 652 Gene3D - 263 583 IPR012334 -
Aip06g00906 652 MobiDBLite consensus disorder prediction 217 240 - -
Aip06g00906 652 PANTHER PECTINESTERASE 12 584 - -
Aip06g00906 652 SUPERFAMILY Pectin lyase-like 266 581 IPR011050 -
Aip06g00906 652 CDD PMEI-like_3 60 211 - -
Aip06g00906 652 Pfam Pectinesterase 269 569 IPR000070 GO:0030599|GO:0042545
Aip06g00906 652 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Aip06g00906 652 TIGRFAM PME_inhib: pectinesterase inhibitor domain 24 209 IPR006501 GO:0004857
Aip06g00906 652 MobiDBLite consensus disorder prediction 618 652 - -
Aip06g00906 652 MobiDBLite consensus disorder prediction 609 652 - -
Aip06g00906 652 ProSitePatterns Pectinesterase signature 1. 294 313 IPR018040 -
Aip06g00906 652 PANTHER PECTINESTERASE 12 584 - -
Aip06g00906 652 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 209 IPR035513 -
Aip06g00906 652 SMART PMEI_2 53 205 IPR006501 GO:0004857
Aip06g00906 652 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Aip06g00906 652 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 211 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00906 Aip-Chr6 12601200 12603804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00906 5 582 Carbohydrate Esterase AT3G05610 48.616 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00906 K01051 - gmx:100801686 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00906 06 12601200 12603804 Aip09g01370 09 23952032 23955788 ECH
Aip06g00906 06 12601200 12603804 Aip06g00906 06 12601200 12603804 ECH
Aip06g00906 06 12601200 12603804 Aip09g01633 09 35682518 35692609 PCT