Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00905 ATGGCTTTGCTTAATCTCTTTTTCATCCTCATGCTTTTACCCTCATCATTTGAGGCTTCACTTTCATCAAGCATCGAAACCCAAGACCTGAACTCCATGATTGCACAAGCCTGCATGAACATCGAAAACCAAAACTCATGCCTCGCCAACATCCAAAACGAGCTCGTCAAGATCGGCCCCCCAAGCCCCACTTCCGTGTTGAGTGCCGCACTCGGTGCCACGATCAACGAAGCCAGGGGGGCCATCGACAAGATCACAAAGTTCACGACGTTCTCCGTGAGCAACCGCGAGCAACTAGCCATAGAAGACTGCAAGGAGCTTCTAGACTATTCCGTTTCGGAGCTGGCATGGTCCATGGGAGAGATGAGAAGAATCCGTGGCGGAGATACAAGCGCGCAATACGAGGGAAACCTGGAAGCGTGGCTAAGTGCAGCTCTGAGCAACCAAGATACTTGCATTGAAGGGTTTGAAGGTACGGACAGGCGCCTCGAGAGTTACATAAGCGGAAGCTTAACGCAAGTTACGCAGCTTATAAGCAATGTGTTATCCCTCTACACTCAACTCCATAAATTACCATTCAGCCCTCCCAGAAAGACTAATACTCTTAATGTCACGACGGTTGTTGATGAGTTTCCCGACTGGATGAGCGAGGGTGACCAACAGCTGCTTAAGGCGAAGTCGCCCCCGCATGGTCGTGCGGACGCTGTGGTGGCGTTGGATGGGAGTGGCCATTTCCGGAGCATCATGGAGGCCGTTAATGCGGCTCCGAGTCATAGTAACACGAGGTATGTCATATACGTGAAGCAGGGGTTGTACAGAGAGAATGTTGATATGAAGAAGAAGATGACCAACATTATGCTCGTTGGTGATGGTATTGGCAGAACCATTCTCACCAGCAACCGCAACTTCATGCAAGGATGGACCACTTTTAGAACTGCTACACTTGCTGTATCCGGGAAGGGATTCATTGCAAGGGACATGACATTCCGCAACACAGCTGGACCAGTGAACCACCAAGCAGTGGCACTTCGTGTGGACTCTGACCAATCAGCGTTCTACAGGTGTAGCATCGAAGGATTCCAAGACACACTTTACGCTCACTCACTGCGTCAATTTTACCGAGAATGTGAAATTTACGGTACCATTGACTTCATCTTTGGCAACGGTGCAGCAGTGTTGCAAAACTGCAAGATCTACACGAGAGTCCCTCTCCCGTTACAAAAGGTTACCATCACGGCCCAAGGAAGAAAAAGCCCACACCAAAGCACAGGCTTCACAATCCAAGATAGCTTTATTCTAGCAACTCAGCCCACTTATCTGGGCCGGCCCTGGAAGGAGTACTCAAGAACAGTTTACATAAACACCTACATGAGTGCGCACGTGCAGCCTCAAGGTTGGCTTGAGTGGTTTGGGAACTTTGCATTGGATACATTGTGGTACGGTGAGTATAGGAACTATGGGCCTGGGTCAGCCCTTGGTGGAAGGATCAAATGGCCCGGGTATCATGTTATTAAGAATCCTGCTGCAGCTAGTTACTTTACGGTTCAGAGGTTCATTAACGGTAACTCATGGTTGCCAAGGACAGGTGTCAAGTTCACTTCAGGCTTGACCAATTGA 1617 0.4941 MALLNLFFILMLLPSSFEASLSSSIETQDLNSMIAQACMNIENQNSCLANIQNELVKIGPPSPTSVLSAALGATINEARGAIDKITKFTTFSVSNREQLAIEDCKELLDYSVSELAWSMGEMRRIRGGDTSAQYEGNLEAWLSAALSNQDTCIEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHKLPFSPPRKTNTLNVTTVVDEFPDWMSEGDQQLLKAKSPPHGRADAVVALDGSGHFRSIMEAVNAAPSHSNTRYVIYVKQGLYRENVDMKKKMTNIMLVGDGIGRTILTSNRNFMQGWTTFRTATLAVSGKGFIARDMTFRNTAGPVNHQAVALRVDSDQSAFYRCSIEGFQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSFILATQPTYLGRPWKEYSRTVYINTYMSAHVQPQGWLEWFGNFALDTLWYGEYRNYGPGSALGGRIKWPGYHVIKNPAAASYFTVQRFINGNSWLPRTGVKFTSGLTN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00905 538 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 189 IPR035513 -
Aip06g00905 538 Pfam Pectinesterase 234 522 IPR000070 GO:0030599|GO:0042545
Aip06g00905 538 Gene3D - 230 536 IPR012334 -
Aip06g00905 538 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 189 IPR035513 -
Aip06g00905 538 PANTHER PECTINESTERASE 6 536 - -
Aip06g00905 538 SUPERFAMILY Pectin lyase-like 233 535 IPR011050 -
Aip06g00905 538 Pfam Plant invertase/pectin methylesterase inhibitor 33 184 IPR006501 GO:0004857
Aip06g00905 538 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 6 536 - -
Aip06g00905 538 ProSitePatterns Pectinesterase signature 2. 378 387 IPR033131 -
Aip06g00905 538 TIGRFAM PME_inhib: pectinesterase inhibitor domain 2 189 IPR006501 GO:0004857
Aip06g00905 538 CDD PMEI-like_3 37 190 - -
Aip06g00905 538 SMART PMEI_2 29 184 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00905 Aip-Chr6 12540574 12542561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00905 1 538 Carbohydrate Esterase AT3G05620 60.617 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00905 K01051 - gmx:100810565 906.36