Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00893 ATGGTAAGGGGAGGAAAAATTAGTGGCAAAAGCAGCTTTAGGAATAGGGCTCGGTCAAAGGAAGGTGGTTCCGATGATTCCGATGAAGATTATGTGGTTTCAGATGAAGATGAAGAAGTGTCCGATTGTCCGGACGAATATAGCTCCTCTCTAGATGGATGTGCAACAGAGGAGAGTTATGATGCTTTTATAGACGAGGAGGAAGAAGATGATGGAATTCAACAAGTGAAGAAATTCAATAGATCAGAGGCCAGGAATGGTGTTTGTGGTCGACAGAAAAATGCAAGTAAAAGCACACGAAAAAGGGGAAGGATTGCATATGCAAAACATGAAGATCAAGAAGCACAAGAAGAACAAGAACAAGAACAAGAACAAGTAAAAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGATGTGGAGGTGGAAGTAGGGAGAAGGAGGGTGAGGATGATGAGGATGAAGATGAGGATTTCAAATATGATGATGATGATGAGGACAATGGCGATGACGACGATGAGGACTTTGATTTTGAAGATGATGATGAGGAATTTTCACTAGAGGAAGGAGATTACTTAGTAGAGGAAGAAGAATCAAGGGGAAGAAAGAAGAAAAATAACAACATGAAAGTGGGCAAGAAGATTTTGAAGAGAAAGGTTTCCGTGACTTCTACCAAACATCGAAAGAGGAAGAAATCTAGAGCTTCAAATAAACCCTTGAAAAAGAAAAGAAGGAATAGAGGGTTAAAGAGGAAAGTAAGATGTGATGATGTGGATGATTTTATTGATAATGGCCCAGCCAGCAGGACAAAAAGGAGGAAAGAATTGGGTAGGCCAAGGAGAATGCTTCTACCCGAGGATTCCAATTCCGATGCATATGGTGCCTCTTCTGGTTCATCTGATTTCGAGTTTACTATCTCCGAAGAAGAAAGAGAACAGGTCCGAGAAGCCCAAGAATTGTGTCAAAGCTCTAGAAGGAATTTGAGGAGTTCTTCCCATTTAACAAAAAATGAAGAGATTGAGTTACATGAAGATCGACACCAACTAAGGAAGCCTCATGGTCGAAAGGGTAAGGAAAAGATAGATGAATCTCAAGGAAGAAAGGGTAAGGAAAAGGTAGAGGATTTAAAAAATGAGTTGGGAAAGCAGGTGTGCGGAATTTGTTTTTCTGAGGAAAATAAAAGAAAAATAAGAGGAATACTAAATTGTTGTACTCACTACTTTTGCTTTACCTGCATTGTGGAGTGGGCAAAAGTGGAAACTCGGTGTCCTTTGTGTAAGCAGAGATTCAGAACAATTACTAAGCCTGCCAGATCGACTGCAGGAGTTGATTTTAGAGAAGTGGTAGTAGAAGTGCCTGAACGCGACCAGGTTTACCAGCCCACCGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGGATGTTATTTGTTCAGAGTGCCATCAAGGTGGAGATGATGCCCTCATGTTACTATGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGTCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGCAGACCGGATGCTTTGGCATCTTCAAGCTCTCAAGTTCAAGAACGTGTGACTGATCCAAGTGTCCCAACTCAAAACTTGCCTGTTAGACCATCAATTGTTCTTAATGAACGAGAAAGTATAGACCTCAACATGTTATCTTCACCCCGGGCATCTTTTAGTCAAGGATTTGGGCATATTTCATCTGCTAGAGTTTCTGGTAGAAGTGTTGAACTAGCTTCTCCAGGACCTGGAGGAGGGGCACCGACTTTATCAGAAAGGCGCTGGATACTCCGACAGATTCACCAGCTACGTTCGGTATCTGGCAGAACCAATGGTACTTCAGCTACCAATTCAACAAGTAACTTGTATAACTCTCAAACCGATCAAGGCAGGGAAACAAATGCAACACAGCATACAAGGGCACAGGATGCGGGAACATCGTACCACCCATTCTTAGACGAGAGATTATGCAACAACAATATGTCTCCATCAATGCAGAATGCAGACCTCTCCTCAACGAGAATTGGCAATGCTAGAAGACCAGTGGTTCAGGATTCAGCTATGCTTGCCAACAGATCTATGCACGGTGTGCTATTGCCCGTACTTGTGGCAACAACACCTTCCGTATCTGATTATGAACAAGTTTATCCGTTCAACAACAGCATAGACGTGGTCACTGACAATAGCTTACCCGTTGCTATCAAAGAAGAGAGTAACTTCGAAACAATAAAGCAGCAGTTGAAGTCTATGGTTAAAAGACACCTGTGGAGCTTATCTCGAGATGTTGATTTAGGGCATAATACTCTCAAGGACGTTGCAAGGAGTTCTAAACACACCGTACTAGCTGCATGTGGTCTTGAGCACAAGAAGAGTGAGGTTCGGTCTGTGCCCGCACCAGATGTCTGCCCCCACATTGAACTAATGGCAGGTGGACAAACTAGTTTGATAAGAGGTTGCTGCTCAACTTGCTTTGATTCTTTTGTAAAAAATGTGGTAAAAAATATTTTGGACAGAAGAATGTCCTCACAGTGGTTACGATTAGGTCTCTAG 2604 0.4251 MVRGGKISGKSSFRNRARSKEGGSDDSDEDYVVSDEDEEVSDCPDEYSSSLDGCATEESYDAFIDEEEEDDGIQQVKKFNRSEARNGVCGRQKNASKSTRKRGRIAYAKHEDQEAQEEQEQEQEQVKDGDGDGDGDGDGDGDGCGGGSREKEGEDDEDEDEDFKYDDDDEDNGDDDDEDFDFEDDDEEFSLEEGDYLVEEEESRGRKKKNNNMKVGKKILKRKVSVTSTKHRKRKKSRASNKPLKKKRRNRGLKRKVRCDDVDDFIDNGPASRTKRRKELGRPRRMLLPEDSNSDAYGASSGSSDFEFTISEEEREQVREAQELCQSSRRNLRSSSHLTKNEEIELHEDRHQLRKPHGRKGKEKIDESQGRKGKEKVEDLKNELGKQVCGICFSEENKRKIRGILNCCTHYFCFTCIVEWAKVETRCPLCKQRFRTITKPARSTAGVDFREVVVEVPERDQVYQPTEEELRSYIDPYEDVICSECHQGGDDALMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPDALASSSSQVQERVTDPSVPTQNLPVRPSIVLNERESIDLNMLSSPRASFSQGFGHISSARVSGRSVELASPGPGGGAPTLSERRWILRQIHQLRSVSGRTNGTSATNSTSNLYNSQTDQGRETNATQHTRAQDAGTSYHPFLDERLCNNNMSPSMQNADLSSTRIGNARRPVVQDSAMLANRSMHGVLLPVLVATTPSVSDYEQVYPFNNSIDVVTDNSLPVAIKEESNFETIKQQLKSMVKRHLWSLSRDVDLGHNTLKDVARSSKHTVLAACGLEHKKSEVRSVPAPDVCPHIELMAGGQTSLIRGCCSTCFDSFVKNVVKNILDRRMSSQWLRLGL 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00893 867 ProSiteProfiles Zinc finger RING-type profile. 389 431 IPR001841 -
Aip06g00893 867 Pfam PHD-finger 481 527 IPR019787 -
Aip06g00893 867 Coils Coil 105 127 - -
Aip06g00893 867 SUPERFAMILY RING/U-box 388 437 - -
Aip06g00893 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 452 IPR013083 -
Aip06g00893 867 Coils Coil 311 331 - -
Aip06g00893 867 MobiDBLite consensus disorder prediction 105 132 - -
Aip06g00893 867 MobiDBLite consensus disorder prediction 255 276 - -
Aip06g00893 867 PANTHER F18C1.6 PROTEIN 1 855 - -
Aip06g00893 867 ProSitePatterns Zinc finger RING-type signature. 408 417 IPR017907 -
Aip06g00893 867 SMART PHD_3 481 526 IPR001965 -
Aip06g00893 867 CDD RING-HC_Topors 389 431 - -
Aip06g00893 867 MobiDBLite consensus disorder prediction 210 254 - -
Aip06g00893 867 MobiDBLite consensus disorder prediction 335 352 - -
Aip06g00893 867 SUPERFAMILY FYVE/PHD zinc finger 452 527 IPR011011 -
Aip06g00893 867 SMART ring_2 389 430 IPR001841 -
Aip06g00893 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 547 IPR013083 -
Aip06g00893 867 MobiDBLite consensus disorder prediction 152 198 - -
Aip06g00893 867 MobiDBLite consensus disorder prediction 624 662 - -
Aip06g00893 867 ProSiteProfiles Zinc finger PHD-type profile. 479 528 IPR019787 -
Aip06g00893 867 MobiDBLite consensus disorder prediction 319 377 - -
Aip06g00893 867 MobiDBLite consensus disorder prediction 28 45 - -
Aip06g00893 867 PANTHER F18C1.6 PROTEIN 1 855 - -
Aip06g00893 867 MobiDBLite consensus disorder prediction 1 305 - -
Aip06g00893 867 MobiDBLite consensus disorder prediction 359 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00893 Aip-Chr6 12361758 12365438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00893 476 525 C2H2 Transcription Factor Family AT3G01460 46.154 1.97e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip06g00893 PHD 1.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00893 - - gmx:100791422 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00893 06 12361758 12365438 Aip06g00893 06 12361758 12365438 ECH