Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00890 ATGGTAATGATGGATCTCAACAAGGAATGGGTGTGTGAGAGCAAGAAGTGTTGTAGTGATTGCAAGACCACCAAGACTCCACTGTGGAGAGGAGGACCTGCTGGTCCCAAGAGTCTTTGCAACGCGTGCGGAATAAGGTACCGGAAGAGAAGGGCTTCAGCGGTGGGAATGAGAAAAGGACAAGAGAGGAAGAGAGAGAGATCACAAAATGGCGGTGGCAGCAGCTCCTCTACCTCCTCCTCTGATAACGAGTTGAAGGAGTCGTTGAAAGTGAATTTGATGGCGTTGGGTGAGGAGTTTTGGTTGCTAAAGAAGAAACAGAGGAGTATGTGTTTGTTGGGGGAAGAGGAACAAGCCGCTGTGTGTTTAATGGCACTCTCTTGTGGCTATGTTTTTGCTTAA 402 0.4826 MVMMDLNKEWVCESKKCCSDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRRASAVGMRKGQERKRERSQNGGGSSSSTSSSDNELKESLKVNLMALGEEFWLLKKKQRSMCLLGEEEQAAVCLMALSCGYVFA 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00890 133 ProSitePatterns GATA-type zinc finger domain. 18 43 IPR000679 GO:0006355|GO:0043565
Aip06g00890 133 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 14 51 - -
Aip06g00890 133 MobiDBLite consensus disorder prediction 55 69 - -
Aip06g00890 133 ProSiteProfiles GATA-type zinc finger domain profile. 18 48 IPR000679 GO:0006355|GO:0043565
Aip06g00890 133 SMART GATA_3 12 62 IPR000679 GO:0006355|GO:0043565
Aip06g00890 133 MobiDBLite consensus disorder prediction 51 84 - -
Aip06g00890 133 CDD ZnF_GATA 18 69 IPR000679 GO:0006355|GO:0043565
Aip06g00890 133 Pfam GATA zinc finger 18 51 IPR000679 GO:0006355|GO:0043565
Aip06g00890 133 Gene3D - 13 74 IPR013088 GO:0006355|GO:0008270
Aip06g00890 133 MobiDBLite consensus disorder prediction 70 84 - -
Aip06g00890 133 PANTHER OS01G0976800 PROTEIN 7 133 - -
Aip06g00890 133 PANTHER GATA TRANSCRIPTION FACTOR 16 7 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00890 Aip-Chr6 12321551 12322493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00890 3 133 C2C2-Gata Transcription Factor Family AT5G49300 51.880 4.48e-33 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip06g00890 GATA 1.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00890 - - lang:109330084 151.754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02869 01 130640850 130641889 Aip06g00890 06 12321551 12322493 ECH
Aip06g00890 06 12321551 12322493 Aip06g00890 06 12321551 12322493 ECH