Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00840 ATGCAGCGTCAAACTAAGAGAGAGCGTGCTGAGATAGAAGAAGAAACTATTATAGTTAAAGCAACAGCAGAGGCTGAAGGTATGATCTCATCAAGTGTATCAATGCTGGTCCAGAGTATAAGGTGTGAAAGCTCAAAGTACGTGTCATTAGACTTTGCTCACTTTGCAAATTCTGGGGTGAAGGCACCTATGGAGATGGTTGTCCTTGATGAAAAGGGGGATACAATTCAATACTCTATTAAAGGCATATTTGTTCCTATCTTCGATGGTCTACTCGCTGAGAGCAACGTGTACGTGGTCACTAATTTTGCAATTGCTTTAAATACCATCAAGTTTAAATATACTAGACACGAATTTAGAATCAACTTCAAGAGGGACACGATTGTGCGTTCGATACAAGACTCTTCAGTTCCATTGAACGGATTCAATTTTATTCCGTTCAAAAAAAATCATACAGAGTCTAAAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCCTCTAAGGGTAACTTGGTCGAGTTCACACGGGACGGGAAGCCGTCAAGTTATATCACGATAGAACTTGATGATCTTGAGGGTGGACAGAAATTAAAGGTAACGTTATGGCAGACTTTGGCTTTTAACTTGCTCAAATATTTGGAGGAACACCCGTGTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATGAAATTTTATAGTGGGGTCATGGGTGTTTCCAACATAAACTACAATTCGAAACTGTTTATCAATGTTGAGTTTTCATCTGCCAGGAATTTCTTTACAAAGGTGAACAAATTGGATCCTGTTGACGGACAAGGCATAATGCCGCTGGTCTGTGATCAACCTGTTTCAATTGAGGAAGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCTGAGATAAAGGAGCATAATCAGGATGCTGTATTTGTTACTACCGGGACAATTAAGGAAGTTGAGACCGAGTTTGGTTGGTGGTACAAAGGATGTAAGAAGTTTCGTCATGGCTTAAGGGAACTTGAGAAAAGATATTTCTGTCCCAATTGCGTTGAAGACTACGGGTTCTATGTGCTAAGGGAAGCAACTATCTATGTATGGTGTACACTGTGCCTCGCATGGAATTGGACAGGAAAATACTCCTCCTAA 1155 0.4017 MQRQTKRERAEIEEETIIVKATAEAEGMISSSVSMLVQSIRCESSKYVSLDFAHFANSGVKAPMEMVVLDEKGDTIQYSIKGIFVPIFDGLLAESNVYVVTNFAIALNTIKFKYTRHEFRINFKRDTIVRSIQDSSVPLNGFNFIPFKKNHTESKEDGYLVDVIGQLASKGNLVEFTRDGKPSSYITIELDDLEGGQKLKVTLWQTLAFNLLKYLEEHPCLTYVVILQMGKMKFYSGVMGVSNINYNSKLFINVEFSSARNFFTKVNKLDPVDGQGIMPLVCDQPVSIEEDFLRLSVYKTIAEIKEHNQDAVFVTTGTIKEVETEFGWWYKGCKKFRHGLRELEKRYFCPNCVEDYGFYVLREATIYVWCTLCLAWNWTGKYSS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00840 384 Gene3D - 293 363 IPR012340 -
Aip06g00840 384 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 64 335 - -
Aip06g00840 384 Gene3D - 136 270 IPR012340 -
Aip06g00840 384 CDD RPA1_DBD_A_like 64 129 - -
Aip06g00840 384 CDD RPA1_DBD_B_like 162 253 - -
Aip06g00840 384 SUPERFAMILY Nucleic acid-binding proteins 64 134 IPR012340 -
Aip06g00840 384 Pfam Domain of unknown function DUF223 65 148 IPR003871 -
Aip06g00840 384 Gene3D - 45 135 IPR012340 -
Aip06g00840 384 PANTHER REPLICATION FACTOR A 1, RFA1 64 335 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip06g00840 384 SUPERFAMILY Nucleic acid-binding proteins 142 263 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00840 Aip-Chr6 11339044 11342493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00840 68 306 Core DNA Replication Machinery Family AT4G19130 23.200 1.59e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00840 - - adu:107477146 545.043