Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00832 ATGGACTATCGTTGGACCAATGGGAGACAGGACACTGGCAGTGGCCGAGACAGGAGACAACATAAAAGAGACCAGGCATATCAGGACTCCTCTGTTGAGAATTCGTTGGAGGATTTTCGTTTGCCGATCAACCACAGGCCAACAGAGAATGTTGACCTGGAAAATGTAGAACAAGCATCCCTTGATACGCAGTTAACGTCATCTAATATTGGCTTCAAGCTTCTCCAAAAGATGGGTTGGAAAGGAAAAGGTCTTGGGAAGGATGAGCAAGGAATCATTGAGCCAATAAAGTCGGGGATGAGAGATCCAAGACTTGGGGTTGGTAAACAAGAGGAGGATGATTTTTTCACCGCAGAGGAAAATATCCAGCGAAGAAAACTAGATATTGAGTTGGAGGAGACAGAGGAAAATGTGAGAAAGCGGGAGGTGTTAGCAGAACGCGAACAAAAAATTCAAACCGAAGTGAAAGAAATTCGAAAGGTGTTCTATTGTGAACTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGTTTCAAACAAATGAAGGAAATGCATGGTGGTAGTAGCCGAGATGATAGGCAAAAACGAGAACAACAGCGTCAAGAGAAAGAGATGGCGAAGTTTGCTCAAATGGCTGATGCACAAAAGCAACAACGACTTCAACTGCAGCAAGAGTCTGGATCAGCATCAGCTTCGTCTGGATCAAAAACTGCTACTGCACTAACAGATCAAGAGCAGCGGAACACGTTGAAATTTGGGTTTTCTTCTAAAGGCACTGCTTCGAAGGTCTCGGTTGGTATCAAGAAGCCAAATATTGCAAAGAAAAAAAATGTTCCCATTTCATCGATTTTTGGCAATGATTCTGATGAAGAATAG 918 0.4292 MDYRWTNGRQDTGSGRDRRQHKRDQAYQDSSVENSLEDFRLPINHRPTENVDLENVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGMRDPRLGVGKQEEDDFFTAEENIQRRKLDIELEETEENVRKREVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGGSSRDDRQKREQQRQEKEMAKFAQMADAQKQQRLQLQQESGSASASSGSKTATALTDQEQRNTLKFGFSSKGTASKVSVGIKKPNIAKKKNVPISSIFGNDSDEE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00832 305 Coils Coil 117 144 - -
Aip06g00832 305 MobiDBLite consensus disorder prediction 1 37 - -
Aip06g00832 305 SMART G-patch_5 65 110 IPR000467 GO:0003676
Aip06g00832 305 Coils Coil 219 239 - -
Aip06g00832 305 MobiDBLite consensus disorder prediction 195 305 - -
Aip06g00832 305 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 305 - -
Aip06g00832 305 Pfam Zinc-finger double-stranded RNA-binding 162 189 IPR022755 -
Aip06g00832 305 ProSiteProfiles G-patch domain profile. 67 112 IPR000467 GO:0003676
Aip06g00832 305 ProSitePatterns Zinc finger C2H2 type domain signature. 164 186 IPR013087 -
Aip06g00832 305 MobiDBLite consensus disorder prediction 195 223 - -
Aip06g00832 305 MobiDBLite consensus disorder prediction 228 276 - -
Aip06g00832 305 Pfam G-patch domain 68 108 IPR000467 GO:0003676
Aip06g00832 305 SUPERFAMILY beta-beta-alpha zinc fingers 143 197 IPR036236 -
Aip06g00832 305 MobiDBLite consensus disorder prediction 11 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00832 Aip-Chr6 11226337 11229740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00832 13 305 C2H2 Transcription Factor Family AT5G26610 65.217 2.17e-125 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00832 - - gmx:100793206 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00832 06 11226337 11229740 Aip06g00832 06 11226337 11229740 ECH