Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00825 ATGGGAAGGCACTCTTGCTGCTACAAGCAGAAGCTTCGCAAGGGCCTTTGGTCTCCCGAGGAAGACGAGAAGCTCTTGAATTACATCACTAAGCATGGCCATGGATGTTGGAGCTCCGTTCCCAAACTAGCCGGTCTGCAAAGGTGCGGGAAGAGCTGCAGATTGAGGTGGATAAATTACCTGCGGCCAGATTTAAAGAGAGGAGCATTCTCTGAGCAGGAAGAGAAGTTGATAATTGAGCTGCATGCGCTTCTTGGTAACAGGTGGTCACAGATTGCTGCACAGTTACCTGGCAGAACTGACAATGAGATCAAGAATCTTTGGAATTCCTGCCTCAAGAAGAAGCTCAGGCTAAGAGGGATTGACCCTAACACTCACCAACCTCTCTCTTCATCCCACAACAACGACAACAAGCAGCACCATCATCAACCATCAACCACCACTGACCACCCAAATTCATCATCCATCGACAACAATCATCCTCAACAGGAATCATCATCACTCTTCCTAGATACACCTACTACTACTACTACTACTACTACTACTTCTTCTTCTCATGATATCGTGGGCTACCTCTCCTTCACCAACAACAACAACAACAACATCTATGGAACAACACCAACCTCTCTTTGCTTCACACCAACCTCCGCCACTACTTCTTCATCTTCAGACCTCAATTCCGCTATGTTCACTTCACTTTTCCCACCACAGATCATGAAGCCTGCCGCTACAACCACTGAACCCCTCAATTGGGAAAGCAGCAGCTTCATTGATAGCACCAGCACCATAGCTTGGGGACAAGAATCCACTGCTCTAGAGGCGGCACAAAAAGTAGATGACATTAATAAGTGGTCTGAATATCTTAACAGCAACATCAACCCCTTCTTCCTCGCCAACAACAACACAATCACACTGCCTTCTCCTTCTATCTACACCACCAACGACGAGATCAAACCAGAAGCTTTCATAAATGTAGATGAATCCAATACCATCGCCTCCTGGCACCAAACCACCACCGGTAGCGCCTCAACCCACCACCAACCACCTTTTCAGCAGCCCTCAGATTTATACACCAAAGATCTCCACACTAGATTTTCACTGGCTTTTGGACAAACCATGTAA 1122 0.4688 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSEQEEKLIIELHALLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRLRGIDPNTHQPLSSSHNNDNKQHHHQPSTTTDHPNSSSIDNNHPQQESSSLFLDTPTTTTTTTTTSSSHDIVGYLSFTNNNNNNIYGTTPTSLCFTPTSATTSSSSDLNSAMFTSLFPPQIMKPAATTTEPLNWESSSFIDSTSTIAWGQESTALEAAQKVDDINKWSEYLNSNINPFFLANNNTITLPSPSIYTTNDEIKPEAFINVDESNTIASWHQTTTGSASTHHQPPFQQPSDLYTKDLHTRFSLAFGQTM 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00825 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aip06g00825 373 MobiDBLite consensus disorder prediction 122 184 - -
Aip06g00825 373 CDD SANT 17 61 IPR001005 -
Aip06g00825 373 PANTHER HOMEODOMAIN-RELATED 260 365 - -
Aip06g00825 373 PANTHER HOMEODOMAIN-RELATED 1 247 - -
Aip06g00825 373 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Aip06g00825 373 MobiDBLite consensus disorder prediction 146 184 - -
Aip06g00825 373 Gene3D - 11 67 - -
Aip06g00825 373 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip06g00825 373 Gene3D - 68 148 - -
Aip06g00825 373 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip06g00825 373 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aip06g00825 373 PANTHER MYB DOMAIN PROTEIN 55 1 247 - -
Aip06g00825 373 PANTHER MYB DOMAIN PROTEIN 55 260 365 - -
Aip06g00825 373 SMART sant 13 63 IPR001005 -
Aip06g00825 373 SMART sant 66 114 IPR001005 -
Aip06g00825 373 CDD SANT 69 109 IPR001005 -
Aip06g00825 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aip06g00825 373 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00825 Aip-Chr6 11160816 11162364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00825 1 373 MYB Transcription Factor Family AT1G09540 44.776 7.60e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip06g00825 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00825 K09422 - gmx:778182 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00825 06 11160816 11162364 Aip06g00795 06 10533706 10535060 ECH
Aip06g00825 06 11160816 11162364 Aip06g00825 06 11160816 11162364 ECH