Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00820 ATGCCAGACCTCATCAGCCACACATCTGTGGGAGTGGCTAGTTTTTTCAGTGGGACTAAAGTTTGTTTACGATATAGGTGCTTCCATGCTAGTCCGGAAGTTTGGGCAAGAAGAGGTGATGAGGCATTTGGGTTGAAGGCCCCAAAGAAGGAGAAGTATGTAAGAAAGGAAGGTAGGAACCAGCCACCTGTTGAAGCTCGATATGTCCCTCGTAATGTCAAAGCACCCAAATCTAATCCTGATAAAACAGTAGAAGTATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGTACTGGAAAATCAGTATCTTCTTTGCAGGATATCCTCACAAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAACCTCTCAGCATGGATACTGCAGAGCTTGCTGCAATGGAAGTTGGAGTCAACGTTAAGAGGTTACATTCAGTTGAGGGTACTGAAATTGTACCACGCCCTCCAGTTGTAACAGTGATGGGCCATGTTGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGACAAACATCAGTGGCAGCCAGAGAGGCTGGTGGCATAACTCAACATCTTGGTGCTTTTGTGGTGGTCATGCCATCTGGGGCATCAATCACATTCCTTGACACCCCTGGTCATGCTGCATTTAGTGCAATGCGAGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGAGTGATGCCTCAAACACTCGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTTGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAGAAAGTAAAACTGCAGCTTGCTTCAGAGGGCTTGATGTTGGAGGAAATGGGTGGTGACATTCAGGTCATTGAAGTTTCAGCACTTCAAAAAACCGGACTGGATAACCTAGAGGAAGCTTTACTCCTTCAAGCCGAAATGATGGATCTGAAGGCACGAATTGATGGGCCTGCTCAAGCTTATGTGGTAGAAGCAAGGCTTGACAAAGGACGCGGTCCATTGATAACTACCATAGTTAAAGCAGGGACCTTAACTTGTGGTCAGTATGTGGTTGTAGGCTCAGAGTGGGGAAGAATAAGAGCTATTAAAGACATGGTGGGAAGGTTAACTCAACGAGCAACACCTGCAATGCCTGTTGAAATTGAAGGGCTTCGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCCAGAATGCTTAGTTCTGGTAGGACAAGGAAATTTGAGGAGGATAGACTTAGGAGGAAGTTGAATGAGGGCATCCCATCTACATTGGAGTCATCAGAGGAGGTTCCGCAGAGGGTTGAGATGCCAATAATAGTAAAGGCAGATGTTCAGGGAACTGTTCAAGCTGTCACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTCTGGTGAATGTTGTTCATGTTGGTGTTGGGCCCATCTCTCAATCTGACGTGGACTTAGCACAAGCTTGTGGTGCGTGCATAGTCGGATTCAATATCAAGAATCCACCCACTGCTCTTAGTCAGGCAGCAACTCGTGCCAGTATCAAGTTGATTCTGCACCGTGTTATTTACCATCTTTTGGAGGACATAGGAAATTTGATAATAGAGAAGGCCCCTGGTACTTTTGAGACCCAGGTGGCTGGGCAGGCAGAGGTGCTGAACATCTTTGAAGTGAAAGGGAGCAAGTCAAAGGGACCTGATGTTAAGATAGCCGGTTGTCGGGTTGTAGAAGGTTTTGTGGTGAGGACAGGAACCATGAGGCTCCTGAGAAGCGGGGAAGTCGTGTTCGAAGGAAATTGTGCATCTCTTAAGCGGGAGAAGCAGGATGTGGATACTGTGAAGAAGGGTAATGAGTGTGGATTAGTTATCAGTGATTGGTACGATTTCCAGATTGGAGATGTTATTCAGTGCTTGGAACAGGTCGTCAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTCAGTGCTGA 2025 0.4588 MPDLISHTSVGVASFFSGTKVCLRYRCFHASPEVWARRGDEAFGLKAPKKEKYVRKEGRNQPPVEARYVPRNVKAPKSNPDKTVEVFEGMTLVELAKRTGKSVSSLQDILTNVGEKVESEFEPLSMDTAELAAMEVGVNVKRLHSVEGTEIVPRPPVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLMLEEMGGDIQVIEVSALQKTGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLITTIVKAGTLTCGQYVVVGSEWGRIRAIKDMVGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRTRKFEEDRLRRKLNEGIPSTLESSEEVPQRVEMPIIVKADVQGTVQAVTDALRTLNSSQVLVNVVHVGVGPISQSDVDLAQACGACIVGFNIKNPPTALSQAATRASIKLILHRVIYHLLEDIGNLIIEKAPGTFETQVAGQAEVLNIFEVKGSKSKGPDVKIAGCRVVEGFVVRTGTMRLLRSGEVVFEGNCASLKREKQDVDTVKKGNECGLVISDWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIQC 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00820 674 Pfam Elongation factor Tu GTP binding domain 158 314 IPR000795 GO:0003924|GO:0005525
Aip06g00820 674 Gene3D - 451 555 IPR036925 -
Aip06g00820 674 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 153 323 IPR000795 GO:0003924|GO:0005525
Aip06g00820 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 323 IPR027417 -
Aip06g00820 674 Gene3D Translation factors 557 659 - -
Aip06g00820 674 CDD mtIF2_IVc 563 652 - -
Aip06g00820 674 Hamap Translation initiation factor IF-2 [infB]. 2 660 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Aip06g00820 674 Gene3D Translation factors 326 439 - -
Aip06g00820 674 CDD IF2_mtIF2_II 329 422 IPR044145 -
Aip06g00820 674 TIGRFAM IF-2: translation initiation factor IF-2 82 657 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Aip06g00820 674 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 450 563 IPR036925 -
Aip06g00820 674 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 28 665 - -
Aip06g00820 674 TIGRFAM small_GTP: small GTP-binding protein domain 156 309 IPR005225 GO:0005525
Aip06g00820 674 Gene3D - 150 325 IPR027417 -
Aip06g00820 674 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 28 665 IPR015760 -
Aip06g00820 674 SUPERFAMILY Translation proteins 327 409 IPR009000 -
Aip06g00820 674 SUPERFAMILY Translation proteins 558 659 IPR009000 -
Aip06g00820 674 CDD IF2_eIF5B 156 320 - -
Aip06g00820 674 Pfam Translation-initiation factor 2 446 545 IPR023115 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00820 Aip-Chr6 11073103 11076861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00820 144 638 Eukaryotic Initiation Factors Gene Family AT1G76810 27.305 2.81e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00820 K02519 - gmx:100790572 1067.76