Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00818 ATGGTGGAGGATATTTGGAACCTGGAGTCTAGGACAGAGGATGAGGCTTGCCAATTTTATAACGCTTATGCTTGTTGGCATGGATTTGTAATGAGGAAGGATGACGTGGTTAGGGATAATCAAAGTAGAATCATTAGCAAGCAAATTGTTTGCAATAAGGAGGGCTGGAGGAATATGAGGTATCTTGATCTGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCTAGCTCAGCTTAGGGTAAAGCTTGACTACGGCTGCGAAAGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCATGATCTGACGCCCCCCCAATTTGCGCATCTTGTTCCGGCCTATTGTCGTCTCACTGTTACTGATAAAGTCCAAGTGAAAAATCTTCATAATTTTGGTGTCAACACGTGCCATATTATGGGATATATTGCGTTCCAGAAGGGTGGATATCGTCATGCTGGCTTCACATGCAAAGATTTGTACAACCACATTGATCGTTATCGTCGGTCAAAACTTAAAAATGGGGATGCCAATGCAGCAATAAACTATTTGATTGGCAAGTCAAACAACGATCTGCTGTTCTTTGGGAAGTATATATTCACTAGTGACGAAGGGCTCGAGCATATTTTTTGGGCAGATGGGCAGTCAATTATCGACTATCACTGCTTTGGAGATATTGTTGCCTTTGATTCAACGTACAAGAAGAATAAATACAACAAACTTTTGGTCATTTTCTCCGGATGCAATCATCATGGGCAGACTGTTATCTTCGGCTCTGGCCTACTATCCGACGAAACCACAGAAACGTATAAGTGGTTGTTGGAAACGTTTGTTGAAGCGATAGGTGGAAAAAGTCCTAAAGCAGTAATAAATGACAGAGACCTTGCCATGCGAGATGCAATCAAGAATGTTCTTCCTGATGCTACCCATTGGTTATGCGAATGGCATCTTCAGAGAAATGCATGTGAAAATATAAAGAATCCAAATTTTCTACGCGATTTTAAGGGTCTTATATATGACAATAACGACCACATAGACTTTGATCGGAGATGGGTAGCCATTTTGGATAAGCACAACCTTGTTGGGAGTACCTGGATGGAAAAGACGTACGAAACTCGTGCGATGTGGTCCCATTGTTTTCTTCGGGATAAGTTTTTCGGTTACATAAGAACGACGTCACAATGTGAAGGTATAAATTCTCTCATCAGATTTTATATTAATCACAGGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAATGAATTAATAGCTGACTTTGAGTCTCAGTGCTCTGAGCCAGTGATGATTACCTTGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACTCAAAACATTTTTAAGAAAATTCGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATCAAGGTATTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTCGTGCAAGTTGTTTGAATCACGTGGTATTCCCCGTAGTCATGTTTTCTGTGCCATGA 1551 0.4113 MVEDIWNLESRTEDEACQFYNAYACWHGFVMRKDDVVRDNQSRIISKQIVCNKEGWRNMRYLDLDDRSREARSLTRTKCLAQLRVKLDYGCERWKVSCFVESHNHDLTPPQFAHLVPAYCRLTVTDKVQVKNLHNFGVNTCHIMGYIAFQKGGYRHAGFTCKDLYNHIDRYRRSKLKNGDANAAINYLIGKSNNDLLFFGKYIFTSDEGLEHIFWADGQSIIDYHCFGDIVAFDSTYKKNKYNKLLVIFSGCNHHGQTVIFGSGLLSDETTETYKWLLETFVEAIGGKSPKAVINDRDLAMRDAIKNVLPDATHWLCEWHLQRNACENIKNPNFLRDFKGLIYDNNDHIDFDRRWVAILDKHNLVGSTWMEKTYETRAMWSHCFLRDKFFGYIRTTSQCEGINSLIRFYINHRNTLIDFMHNLDRALKEYRNNELIADFESQCSEPVMITLLEVYERSASCYFTQNIFKKIRNEIQRAGALNIKVLSTTLDKVEFSVTRASCLNHVVFPVVMFSVP 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00818 516 Pfam FAR1 DNA-binding domain 18 108 IPR004330 -
Aip06g00818 516 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 11 488 IPR031052 GO:0006355
Aip06g00818 516 Pfam MULE transposase domain 230 324 IPR018289 -
Aip06g00818 516 PANTHER OS02G0262500 PROTEIN 11 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00818 Aip-Chr6 11060501 11062051 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip06g00818 MULE 6.3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00818 - - aip:107614789 951.044