Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00815 ATGGCTTCTTTGATTGGAGTTTCTTCCATATACCAAACTCCCTCTACAACTCTCGACCTACACAAACGACCACCGCTTACTACTACTACTTCTTCTTCCTCTCTTTCCTTGCAATGCTTGGACAGCAAGTCCCACTTCAACAACGTTCGCAGAGCACACCTTTCTACTAACAATGGCAAGGGAGGTTTTAAGCCCACTGTTAGTTTTGTTACTTCTGCCATTGCCACTCCAAATTCTTCGGTCCTCAGCGAAGAAGCATTCAAGGGGATAGGCAGCGGTGATGACTTCCCCGACGACGATGACTTTGCCGGCTTTGGCTCTGAAACCGACGAGGGATCTTCTGCTGTTAGCTCTGAAGAACTCGACGTTTCCAAGCTTGGCCTTCCTTCGCGCCTCGTTGATTCCCTCCTCAAGCGTGGGATTTCGCATCTTTTCCCCATTCAGAGAGCGGTGTTGGTACCGGCATTGGAAGGTAGGGATATCATTGCTCGGGCAAAGACTGGGACTGGCAAGACACTAGCATTTGGGATTCCCATTATTAAAGGCCTTACTGAAGATGAACATTCAAGTTCTCTCAGGCGGTCTGGTCGCCTCCCCAGAGTGTTGGTTCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTAGAGAAGGAGATAAAGGAATCTGCACCTTATCTGAGCACAGTTTGTGTTTACGGGGGTGTTTCCTATGTTACTCAACAAAGTGCGCTTTCACGTGGAGTTGATGTAGTTGTTGGGACGCCTGGTAGAATAATTGACCTAATCAATGGGAACAGCCTTAGACTGAATGAAGTTCAGTACCTGGTCCTCGATGAAGCGGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATATTGGAAAAGCTCCCATCAGAGAGGCAGAGCATGCTTTTTTCTGCAACTATGCCAAGTTGGGTAAAGAAATTGGCTCGAAAGTATTTGGACAATCCATTGACAATAGATCTGGTTGGCGATGAAGAAGAAAAGCTCGCAGAAGGGATAAAACTTTTTGCTATATCAGCAACTGCCACTTCAAAGCGAACAATTCTTTCCGATCTTATAAGTGTTTATGCTAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAATGTCTGAAGCATTACATGGTGATATATCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTTCGACAAGGAAAATTTACAGTTCTTGTTGCCACTGATGTTGCAGCCCGTGGACTTGATATTCCTAATGTTGATTTGATTATTCATTATGAGCTTCCCAATGATCCGGAGACTTTTGTGCATCGCTCTGGTCGTACTGGGCGTGCAGGGAAACAAGGTACTGCTATTCTTATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCTCTAGAGCGTGATGTAGGCTGCAAATTTGAATTCATCAGTCCACCCGGTATACAAGAGATTTTGGAGGCATCTGCTGAGCAAGTTGTTGCCACGCTCAATAGGGTTCATCCCGAGTCTGTTGAGTTTTTTACACCAACTGCACAAAAATTGATTGAAGAACAGGGAACAAGTGCCCTTGCAGCTGCACTAGCACAAATGAGTGGATTCTCTCGTCCTCCATCGTCCCGATCTTTAATCAACCATGAACAGGGATGGGTTACATTGCAGTTGATCCGAGATTCAGATAGTAGAAGATACTTCTCCGCAAGATCAGTCACTGGGTTTCTGGCTGAGGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGGGCTGTTTTCGATCTTCCAGAGGAAATTGCTAAAGAGTTACTTAACAGGGAGATACCACCTGGAAACACTATAACCAAGGTTACCAAGTTGCCTGCCTTGCAAGATGATGGGCCACCAGGTGATTTCTATGGGAAGTTCTCTGACAGAGATCGTAGTAGCCGAAGAGGTTCAGGTTCTGGTTCTAGGGATCGGAGAGGCGGTTTTAGAAGCTCACGGGGATATGGAGGCCGAGACTCTGATGATGATTTTGGTGATTCATATAGGAGAGGCAGTAGAAGTAATAATAAAACTGGCAGTAGCTGGTCTCGAGCTGGAAGATCCAGTGGTGATGATTGGCCAATTGGCGGTAGACGATCATCAGGCAGATCTTCATCGTCAGACAGAGGTGGTTTTGGAGGGTCCTGTTTTAATTGTGGGGAGTCTGGGCATCGAGCATCAGATTGTCCAAACAAGCGCAGCTTCTTTTAG 2313 0.4548 MASLIGVSSIYQTPSTTLDLHKRPPLTTTTSSSSLSLQCLDSKSHFNNVRRAHLSTNNGKGGFKPTVSFVTSAIATPNSSVLSEEAFKGIGSGDDFPDDDDFAGFGSETDEGSSAVSSEELDVSKLGLPSRLVDSLLKRGISHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEHSSSLRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLRLNEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPSWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLFAISATATSKRTILSDLISVYAKGGKTIVFTQTKRDADEVSLALTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILMYTSSQRRTVRSLERDVGCKFEFISPPGIQEILEASAEQVVATLNRVHPESVEFFTPTAQKLIEEQGTSALAAALAQMSGFSRPPSSRSLINHEQGWVTLQLIRDSDSRRYFSARSVTGFLAEVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLNREIPPGNTITKVTKLPALQDDGPPGDFYGKFSDRDRSSRRGSGSGSRDRRGGFRSSRGYGGRDSDDDFGDSYRRGSRSNNKTGSSWSRAGRSSGDDWPIGGRRSSGRSSSSDRGGFGGSCFNCGESGHRASDCPNKRSFF 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00815 770 MobiDBLite consensus disorder prediction 657 704 - -
Aip06g00815 770 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 518 IPR001650 -
Aip06g00815 770 MobiDBLite consensus disorder prediction 636 746 - -
Aip06g00815 770 CDD DEADc 132 330 - -
Aip06g00815 770 SUPERFAMILY Retrovirus zinc finger-like domains 731 768 IPR036875 GO:0003676|GO:0008270
Aip06g00815 770 Pfam Zinc knuckle 749 765 IPR001878 GO:0003676|GO:0008270
Aip06g00815 770 Pfam GUCT (NUC152) domain 550 649 IPR012562 GO:0003723|GO:0004386|GO:0005524
Aip06g00815 770 Gene3D - 106 332 IPR027417 -
Aip06g00815 770 SMART ultradead3 140 346 IPR014001 -
Aip06g00815 770 PANTHER - 65 761 - -
Aip06g00815 770 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 65 761 - -
Aip06g00815 770 MobiDBLite consensus disorder prediction 99 120 - -
Aip06g00815 770 Gene3D - 347 550 IPR027417 -
Aip06g00815 770 MobiDBLite consensus disorder prediction 705 721 - -
Aip06g00815 770 Pfam DEAD/DEAH box helicase 145 318 IPR011545 GO:0003676|GO:0005524
Aip06g00815 770 Gene3D - 739 768 - -
Aip06g00815 770 SMART c2hcfinal6 749 765 IPR001878 GO:0003676|GO:0008270
Aip06g00815 770 CDD SF2_C_DEAD 343 472 - -
Aip06g00815 770 CDD GUCT_Hera 557 629 - -
Aip06g00815 770 SMART helicmild6 383 463 IPR001650 -
Aip06g00815 770 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 329 IPR014001 -
Aip06g00815 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 484 IPR027417 -
Aip06g00815 770 Pfam Helicase conserved C-terminal domain 356 463 IPR001650 -
Aip06g00815 770 ProSiteProfiles Zinc finger CCHC-type profile. 750 765 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00815 Aip-Chr6 11023991 11029094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00815 147 485 Eukaryotic Initiation Factors Gene Family AT1G72730 39.368 4.35e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00815 - - gmx:100779706 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00815 06 11023991 11029094 Aip09g01436 09 25640075 25647034 ECH
Aip06g00815 06 11023991 11029094 Aip06g00815 06 11023991 11029094 ECH