Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00806 ATGAAAACATTCTTCTTTTTATTATTGTGTTTAGTGTTATTCATTGCACAACATAGAGTTGAATGTGCACCGTGGCAGAAAGCTCATGCAACTTTCTATGGTGGAGCCGATGCCTCAGGAACAATGGGTGGTGCATGTGGCTATGGGAATCTGTACACAGATGGTTACGGTACGAAGACGACGGCTCTGAGTACCGTTCTGTTTAACGACGGGAAGGCATGCGGCGGTTGCTATCAGATAGTTTGTGATGCAAGCCAAGTGCCGCAATGGTGTCTTAGGGGCACTTTCATCACAGTTACTGCCACAAACTTTTGTCCTCCAAACTATGCACTCCCTAATGACAATGGCGGTTGGTGTAATCCTCCAAGACCACACTTCGACATGTCTCAACCTTCCTTTCTAACTATTGCCAAATACAAGGCCGGCATCGTACCCATACTGTACAGAAAAGTTTGGTGTAGAAGGAGTGGAGGGATAAGATTTAGCATCAAAGGAAGGGATTATTTCGAATTAGTGACGATAAGCAATGTAGGTGGAGTTGGGGAGATAGGGCAAATGTGGGTAAAAGGGTCAAAGAAGAATGTGTGGGAAGCAATGAGCAGGAACTGGGGTGTTAACTGGCAAAGTTTAAGCTATCTCAATGGACAGAGCTTGTCCTTCATGGTTCAACTCACCAATGGAAGAACCGTCATTGCTTATAATGTAGCACCCTCCAATTGGAAATTTGGCCAATCTTTCATCTCTAATGTTCAGTTCAACTAA 762 0.4423 MKTFFFLLLCLVLFIAQHRVECAPWQKAHATFYGGADASGTMGGACGYGNLYTDGYGTKTTALSTVLFNDGKACGGCYQIVCDASQVPQWCLRGTFITVTATNFCPPNYALPNDNGGWCNPPRPHFDMSQPSFLTIAKYKAGIVPILYRKVWCRRSGGIRFSIKGRDYFELVTISNVGGVGEIGQMWVKGSKKNVWEAMSRNWGVNWQSLSYLNGQSLSFMVQLTNGRTVIAYNVAPSNWKFGQSFISNVQFN 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00806 253 SMART dpbb_1 60 148 IPR007112 -
Aip06g00806 253 Pfam Lytic transglycolase 60 148 IPR009009 -
Aip06g00806 253 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Aip06g00806 253 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Aip06g00806 253 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Aip06g00806 253 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Aip06g00806 253 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Aip06g00806 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Aip06g00806 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 248 IPR007117 -
Aip06g00806 253 Gene3D - 14 154 IPR036908 -
Aip06g00806 253 PANTHER EXPANSIN 5 252 - -
Aip06g00806 253 SUPERFAMILY Barwin-like endoglucanases 9 176 IPR036908 -
Aip06g00806 253 PANTHER EXPANSIN-A15 5 252 IPR002963 GO:0009664
Aip06g00806 253 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Aip06g00806 253 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Aip06g00806 253 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Aip06g00806 253 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Aip06g00806 253 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Aip06g00806 253 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Aip06g00806 253 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Aip06g00806 253 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Aip06g00806 253 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Aip06g00806 253 SUPERFAMILY PHL pollen allergen 155 248 IPR036749 -
Aip06g00806 253 Gene3D - 158 253 IPR036749 -
Aip06g00806 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 158 IPR007112 -
Aip06g00806 253 Pfam Expansin C-terminal domain 159 237 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00806 Aip-Chr6 10894723 10895663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00806 1 252 Expansin Gene Family AT4G01630 70.980 5.95e-138 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00806 - - aip:107648027 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00806 06 10894723 10895663 Aip06g00806 06 10894723 10895663 ECH
Aip06g00806 06 10894723 10895663 Aip09g01432 09 25460028 25462295 PCT