Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00795 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAGCTTCGGAAGGGTCTATGGTCTCCTGAAGAGGATGAAAAGCTTCTGAGGCATATCACTAAGTACGGTCATGGATGTTGGAGCTCTGTTCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGTTGCAGGCTTAGGTGGATCAATTACTTAAGGCCTGATTTAAAGAGAGGTACATTTTCTCAGGAGGAAGAAAATCTCATCATTGAACTTCATGCTGTGTTAGGGAATAGATGGTCTCAGATTGCGGCGCAGCTTCCGGGGAGGACAGACAATGAAATCAAGAATCTGTGGAATTCATGCTTGAAGAAGAAGCTGAGGCAAAGAGGCATAGACCCTGTTACACACAAGCCATTATCTGAATTGTCAGAGGAGAAGAGCCAGATACAAGAGAAAGCATTGTCCAATGATAATGAATTGAACTTGTTGAGATCAGAGAGTTCCAATAAGTCTGATGGAGCTTCTTCCTATGATCATCAACAACAACAACAACAACAACAACAACAAGGATTTGTTCCAACATCAGAGATGGAAGGTTCTTCTTCCACTAACAAGGACATTTTCCTTGACACTACAACAAGGTTCATGGCTAACACTTGCTCAGATTTTATGGGCAACTACAACATGAGTTATGCATCATCATCTTCCAATGTCACTGTCACCGACAACAATTGGTTCACACAAACATCAAGGCCTTCTTTTGATATCAACTCAGATTTCACCTCATCATCATCATTCCTACCTGGTTCCTTTTGCTACAAGCCAGAATCTCTCAAGAACACCAACATGCTTTCTTCTTCTTCTTCTTCATGGGGATTGATCACAGATTGCAGCATGGAAGAAGCAGAAGAGGCAAAGTGGTCTGAGTATCTTCACAATCAAATGTTGATGCTTGCAGCTGTTCAGAACAACAACAACAACAACAACAACAACAACCAAGCTTCTTTATGCAATGAGATAAAGCCTCTTCCTTCAACCACCACAGTAACAACAACACCACCACCACATTTGGTTCCTGATACTTTAGGGGCTATCATGTTACCTCATTCCAAGAATCAACATCACCATACATCACAAACTTCTTCTACCACCACCTTTTCCAAGGATATCCAGAACCTAACAGCAGCCTTTGGACATATATAA 1173 0.4186 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSELSEEKSQIQEKALSNDNELNLLRSESSNKSDGASSYDHQQQQQQQQQQGFVPTSEMEGSSSTNKDIFLDTTTRFMANTCSDFMGNYNMSYASSSSNVTVTDNNWFTQTSRPSFDINSDFTSSSSFLPGSFCYKPESLKNTNMLSSSSSSWGLITDCSMEEAEEAKWSEYLHNQMLMLAAVQNNNNNNNNNNQASLCNEIKPLPSTTTVTTTPPPHLVPDTLGAIMLPHSKNQHHHTSQTSSTTTFSKDIQNLTAAFGHI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00795 390 MobiDBLite consensus disorder prediction 127 194 - -
Aip06g00795 390 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Aip06g00795 390 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip06g00795 390 CDD SANT 17 61 IPR001005 -
Aip06g00795 390 PANTHER MYB DOMAIN PROTEIN 55 1 336 - -
Aip06g00795 390 SMART sant 13 63 IPR001005 -
Aip06g00795 390 SMART sant 66 114 IPR001005 -
Aip06g00795 390 Gene3D - 11 67 - -
Aip06g00795 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip06g00795 390 MobiDBLite consensus disorder prediction 143 194 - -
Aip06g00795 390 Gene3D - 68 148 - -
Aip06g00795 390 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip06g00795 390 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip06g00795 390 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aip06g00795 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip06g00795 390 PANTHER MYB DOMAIN PROTEIN 55 1 336 - -
Aip06g00795 390 CDD SANT 69 109 IPR001005 -
Aip06g00795 390 MobiDBLite consensus disorder prediction 127 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00795 Aip-Chr6 10533706 10535060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00795 1 143 MYB Transcription Factor Family AT4G01680 87.671 7.96e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip06g00795 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00795 K09422 - gmx:100819449 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00825 06 11160816 11162364 Aip06g00795 06 10533706 10535060 ECH
Aip09g01414 09 25022975 25025003 Aip06g00795 06 10533706 10535060 ECH
Aip06g00795 06 10533706 10535060 Aip06g00795 06 10533706 10535060 ECH
Aip06g00795 06 10533706 10535060 Aip09g01414 09 25022975 25025003 PCT