Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00792 ATGAATCCATTAATGGGGGAGAATATGTTCAACTCCAGCCGCACAGGGATGACAAGAAGCTCCTCCTTGTTGCATGTGAATAAGGATATTGGTGAGCTGGTATGGGAAAATGGTGAAGTTAAAGTGCAAGGAAGAGGAGCAGCAGTGGAAGAAAGAGCAGCAAAGTTAGAGAGATTTTACTGCTCCTCAATTTTGGATCAAAGCAAGAAGCAGATCCAACAAGGATTTTCAAACTTCAAACTCATTAGTAATACATATTCCTCCTCCTTATCACAACAGTGCAAGAAACCAAGAATAATAGATTTTTCAGGTTCAGCACAAGCAACAACAAAATCACACACACTACAGCACTTGGGTACTTGCAATAATAATAATAATCAGAGAACATCATTAGGAGGAGGAATGGTGAACTTCCCAAACTTCTTGGTTCCTTCACTCTTACTCAACAAATCTTCTTCTGCTGCTGCTGCTGCCACTAGTAGTAAAGGTCATGATCATTCATCTGTGGTGATTGATTCTTCTAATAATAACAAAGCAGCAACACAAGAACTCAAAGAAACACCTTTTCATCAGGTACAACCACTTGATCGACACTCTCATGCTCAAAAACCATATCATGGAGCCTCATCAAGTTCAGCAGCACCACCACCACCTAATTACAATAGTAATAATAATATTGAGCAACACTTGGTAGTAGCATCTTCCCCTGTAAGCTCTATTGGAGCCTCAAACGACCCTGACATTGGTATTATGAGGAAGCAGCATGAGGAATACAGCAACATCACTGATCATGATCATGATGACACCACAACATATATAAGTGATGATGATGATGAAGAAACAGAAGATGTAATAATAGCAAAGGAAACACCAGCTGCAGGTACCAGAGCCAAGAGAAGCAGGGACCCAGAGGTTCATAATTTATCTGACAGGGTCAACAAGAGGATTCATACATTGAAAGAACTCATACCCAATTGCAATAAGATTGATAAAGCTTCAACTCTTGATGATGCAATTGACTATCTTAAGACCCTGAAGCTTCAGTTGCAGATAATGTCAATGGGGAGAGGACTTTGCATGCCATTGATGATGTTACATAATCATCATAATCAGTTAATGTGTTATAGGCCATCATCAGGCACAGGCATTCCCCATCAAAACATGTTTGATGGTTTCTTCAACCAAATGAGGCCTATGATTATGCCACCATCACCACTTTTCATCAATCCCACTCCACCAATTGCGCCATTGTCAATCGCCAATTCTTCCAGTCTAGATGTCTCACATGTTCAAGCAATCAATAATGGTGATCAGGTTTCCCTTCACCAACACACAACTAGCAGCAGCTACCCCTTCTATTTTCCCACAATCATCAATCAGGAGGAAAAGAATAATTATGGAATGGAATAG 1410 0.4021 MNPLMGENMFNSSRTGMTRSSSLLHVNKDIGELVWENGEVKVQGRGAAVEERAAKLERFYCSSILDQSKKQIQQGFSNFKLISNTYSSSLSQQCKKPRIIDFSGSAQATTKSHTLQHLGTCNNNNNQRTSLGGGMVNFPNFLVPSLLLNKSSSAAAAATSSKGHDHSSVVIDSSNNNKAATQELKETPFHQVQPLDRHSHAQKPYHGASSSSAAPPPPNYNSNNNIEQHLVVASSPVSSIGASNDPDIGIMRKQHEEYSNITDHDHDDTTTYISDDDDEETEDVIIAKETPAAGTRAKRSRDPEVHNLSDRVNKRIHTLKELIPNCNKIDKASTLDDAIDYLKTLKLQLQIMSMGRGLCMPLMMLHNHHNQLMCYRPSSGTGIPHQNMFDGFFNQMRPMIMPPSPLFINPTPPIAPLSIANSSSLDVSHVQAINNGDQVSLHQHTTSSSYPFYFPTIINQEEKNNYGME 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00792 469 PANTHER TRANSCRIPTION FACTOR PIF3 5 446 IPR044273 GO:0003700|GO:0006355
Aip06g00792 469 SMART finulus 307 351 IPR011598 GO:0046983
Aip06g00792 469 Gene3D - 294 346 IPR036638 GO:0046983
Aip06g00792 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 345 IPR011598 GO:0046983
Aip06g00792 469 MobiDBLite consensus disorder prediction 204 224 - -
Aip06g00792 469 Pfam Helix-loop-helix DNA-binding domain 310 345 IPR011598 GO:0046983
Aip06g00792 469 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 446 - -
Aip06g00792 469 MobiDBLite consensus disorder prediction 195 224 - -
Aip06g00792 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 356 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00792 Aip-Chr6 10480444 10482633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00792 241 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 45.385 1.05e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g00792 HLH 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00792 K12126 - gmx:100804665 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00792 06 10480444 10482633 Aip06g00792 06 10480444 10482633 ECH
Aip06g00792 06 10480444 10482633 Aip09g01405 09 24754822 24757309 PCT