Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00787 ATGGGAAGAAAAGCTGCTACTACTTGTTCCTCTTCCTCTAACATTTCTTCAACTGCTTCCTTGAATCTGAGGCTTGCACTCAGCACTCATGAAGAATGTGGTGGAAGCCTGTTTGTGAAGGTGTACATGGAAGGCATTCCAATTGGGAGGAAGCTCAACATCACCATTCTCTGGGGTACAGAGATGGATGAAGTTGTAGTTCAACCTGGTGAGAGATGCCATGTCCTCACTTATGAAGATGAAGAAGGAGATCTTGTTATGGTTGGAGATGTTCCTTGGGAGATGTTTGTTTCCACTGTAAAGAGGTTGAAGATCACAAGGGTAGACACATTCACTACCTCTTGA 345 0.4406 MGRKAATTCSSSSNISSTASLNLRLALSTHEECGGSLFVKVYMEGIPIGRKLNITILWGTEMDEVVVQPGERCHVLTYEDEEGDLVMVGDVPWEMFVSTVKRLKITRVDTFTTS 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00787 114 Pfam AUX/IAA family 74 107 IPR033389 -
Aip06g00787 114 Pfam AUX/IAA family 29 55 IPR033389 -
Aip06g00787 114 PANTHER AUXIN-INDUCED PROTEIN 35 111 - -
Aip06g00787 114 ProSiteProfiles PB1 domain profile. 36 110 IPR000270 GO:0005515
Aip06g00787 114 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 111 IPR003311 GO:0005634|GO:0006355
Aip06g00787 114 Gene3D - 37 113 - -
Aip06g00787 114 SUPERFAMILY CAD & PB1 domains 31 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00787 Aip-Chr6 10438715 10439472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00787 40 105 B3 DNA Binding Superfamily AT4G23980 33.333 1.07e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aip06g00787 AUX_IAA 6.1e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00787 K14484 - gmx:100818376 124.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00787 06 10438715 10439472 Aip09g01399 09 24633295 24635357 PCT