LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g00779	ATGTTGAATTGGAATGGGAAGGGGATAACTCTCTCCGGATCTGCCGCACGGTGCCCTCTCGCCGCGCTTCCTCCTCTCGGCATCCCTGTCGTGCCGAGCTTCCATATCCATGCTCTTGGTGACACTACCAATGGCTGCAATTCCACGGGTCCTCACTTCAATCCTCTTAACAAATACCATGGAGCTCCTGCCGATCATCACCATCATGCTGGTGATTTGGGTAACATTCTTGCAGGCCCTGATGGGGTTGCTGAGATTTCTATCACAGATTCACAGATTCCGTTGAGTAGAGTGCATTCCATACTTGGCAGGGCGGTTGTTGTGCATGCTGATCCTGATGACCTTGGAAGGGGAATTGAGCCCTGGACTTTCGTTCAGAGGTTAGGAGAAGCTGTTTTCATTCCAACAGGTTGTCCTCACCAAGTCAGAAATCTGAAGCTGAAGAAAATTAGAGTACACACAATGAAAGATGTGGTTGAAAATTTGGAGAAAGCACGAATTCTTCTCGGCTCAAAATCGTCCGTTATCAATGTTATTATTGATCTCTATGCTAGTTCATGGAGTGGGAGGCTGCAACACGAGAACTGA	588	0.4796	MLNWNGKGITLSGSAARCPLAALPPLGIPVVPSFHIHALGDTTNGCNSTGPHFNPLNKYHGAPADHHHHAGDLGNILAGPDGVAEISITDSQIPLSRVHSILGRAVVVHADPDDLGRGIEPWTFVQRLGEAVFIPTGCPHQVRNLKLKKIRVHTMKDVVENLEKARILLGSKSSVINVIIDLYASSWSGRLQHEN	195

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g00779	195	Gene3D	Superoxide dismutase, copper/zinc binding domain	20	137	IPR036423	GO:0006801\|GO:0046872
	Aip06g00779	195	PANTHER	SUPEROXIDE DISMUTASE [CU-ZN] 3	33	120	-	-
	Aip06g00779	195	Pfam	Copper/zinc superoxide dismutase (SODC)	32	117	IPR001424	GO:0006801\|GO:0046872
	Aip06g00779	195	PANTHER	SUPEROXIDE DISMUTASE CU-ZN -RELATED	33	120	IPR024134	-
	Aip06g00779	195	SUPERFAMILY	Clavaminate synthase-like	116	145	-	-
	Aip06g00779	195	CDD	Cu-Zn_Superoxide_Dismutase	34	118	IPR001424	GO:0006801\|GO:0046872
	Aip06g00779	195	PRINTS	Cu-Zn-superoxide dismutase family signature	33	55	IPR001424	GO:0006801\|GO:0046872
	Aip06g00779	195	PRINTS	Cu-Zn-superoxide dismutase family signature	88	110	IPR001424	GO:0006801\|GO:0046872
	Aip06g00779	195	PRINTS	Cu-Zn-superoxide dismutase family signature	69	78	IPR001424	GO:0006801\|GO:0046872
	Aip06g00779	195	Pfam	JmjC domain, hydroxylase	108	146	IPR003347	-
	Aip06g00779	195	SUPERFAMILY	Cu,Zn superoxide dismutase-like	32	125	IPR036423	GO:0006801\|GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g00779	Aip-Chr6	10320211	10325670	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Aip06g00779		Sod_Cu	5.7e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g00779	K04565		-	sind:105159637	154.836