Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00767 ATGCGCTTAATTAACCTTCCCCATTCCTCTTCCGTTAAGAGCTCACACCACATGCACTTACAGATCAAAAGCTTTTGCGAAAGAAAAGTAGGAGTTGTTGTTGGTGCCGTGGTAGTTGTGAACAACAACGGCACCGGAAACAATGGAGGAGAGTTGAAGACGTCGAACAAGGCGGTGAGCGCAGTGTGTCAAAGCGCCGATGATCAGAAGCTCTGCCACGACGTGCTGACACCTGTGAACTCATCAAATCCCAAGGACTACATCACGCAGGTGGTGAAATTCTCCACGGAAAGCGTGTTGAAAGCCCTTAACATGAGCGACAGGCTCATGGTGGAGAGCGTGGCCAACGGCACCAGCGACGGAGGCGTCAAGATGGCTCTGGACGACTGCAAAGACCTCTTGCAATCAGCGATCCACGAGCTTGAGGCCTCCGGCGTGTTTGTGAACAGCCAATCGCTTCCGGAAGTGTTCACAAACAGTGCGGAGCTGAAGAACTGGTTGGGCGCCGTGATCGCCTACCAGCAATCTTGCCTTGACGGGTTCGACACCGATGGGGAGAAGCATGTCCAAGGTCAGTTGCAGAGCGAGAGCTTGGATAGCGTGATGAAGCTCACCGCCTTGGCCCTGGATGTTGTCGCCGGTGTCTCTAAGGTTCTGTCTGAGTTAGGGCTCAACTTGACCAACAGGCCCGTTCGTCGCCTCCTTGGGCTTGATAAATATGGCTTCCCAAGTTGGTTGTACCCTCATGACCGTAAGCTCATCAATGAGGCCAGCCAGGGTTCCATTGTCCCGAACGCTGTTGTTGCCAAGGATGGTAGTGGCCAGTACAAGACTGTTTTGGAAGCCATTAATGCTTACCCCAAGAAACACCAAGGCAGGTGGGTTATCTATGTTAAGGCTGGTATCTACGACGAGTACATCACCGTCGACAAGGCCAAGCGTAACATCTACATGTACGGTGATGGCCCCGCCAAAACCATCATCACCGGTCGCAAGAACTTCGCTGAAGGTGTCAAGACCATGAGGACTGCCACCTTCACCACCGTTGCTGAGGGATTCATTGCTAAGGGTATTGCTTTTGAGAACACCGCCGGTCCAGGTGGACACCAAGCAGTGGCCCTCCGCGTGATGGGTGACCGCTCAGCCTTCTTCGACTGCGCGTTCCGTGGCCACCAAGATACCTTGTACGCCCATGCTCACCGTCAGTTCTATCGCAACTGCGAAATTAGCGGCACCATTGACTTCATCTTCGGCTACGCTTCAACCTACATCCAGAACTCCAAGATCATCGTGAGGAAGCCCAAGGCAAACCAGCAGAACATCATCGTTGCTGACGGTACCGACCAGAAGAACATGCCATCGGGTGTAGTCCTCCATAACTGCCAGATCTTGGCAGAGCCAAGCCTGGAAGCAGAGAACGGGAAGGTGAGAACCTTCTTGGCAAGACCATGGAAGGCGTTCTCGAGGGCAGTGTTCATTGAGAACACCATCGGTGGCTTCATCAACAAGGAGGGTTACATTCCATGGTCACCAGCTGCCCCCAACAACGAGCACGCATACTTTGGTGAGTTCGGAAACATTGGAGCTGGTGCTGATGCTTCTGGAAGGGTCAAGTGGGCCAAGGGTCTTATCTCCAAGGATGAGGCTTCTCAGTTCACTGTTGACAATTTCCTCCAAGCTAACTCATGGTTGCACGACACTGGTTTTCCTTTTGATGCTAGCTTCACCAAGAACTAA 1737 0.5273 MRLINLPHSSSVKSSHHMHLQIKSFCERKVGVVVGAVVVVNNNGTGNNGGELKTSNKAVSAVCQSADDQKLCHDVLTPVNSSNPKDYITQVVKFSTESVLKALNMSDRLMVESVANGTSDGGVKMALDDCKDLLQSAIHELEASGVFVNSQSLPEVFTNSAELKNWLGAVIAYQQSCLDGFDTDGEKHVQGQLQSESLDSVMKLTALALDVVAGVSKVLSELGLNLTNRPVRRLLGLDKYGFPSWLYPHDRKLINEASQGSIVPNAVVAKDGSGQYKTVLEAINAYPKKHQGRWVIYVKAGIYDEYITVDKAKRNIYMYGDGPAKTIITGRKNFAEGVKTMRTATFTTVAEGFIAKGIAFENTAGPGGHQAVALRVMGDRSAFFDCAFRGHQDTLYAHAHRQFYRNCEISGTIDFIFGYASTYIQNSKIIVRKPKANQQNIIVADGTDQKNMPSGVVLHNCQILAEPSLEAENGKVRTFLARPWKAFSRAVFIENTIGGFINKEGYIPWSPAAPNNEHAYFGEFGNIGAGADASGRVKWAKGLISKDEASQFTVDNFLQANSWLHDTGFPFDASFTKN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00767 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 209 IPR035513 -
Aip06g00767 578 Pfam Pectinesterase 265 560 IPR000070 GO:0030599|GO:0042545
Aip06g00767 578 Gene3D - 259 575 IPR012334 -
Aip06g00767 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 215 IPR035513 -
Aip06g00767 578 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Aip06g00767 578 Pfam Plant invertase/pectin methylesterase inhibitor 58 210 IPR006501 GO:0004857
Aip06g00767 578 CDD PMEI-like_3 61 217 - -
Aip06g00767 578 SUPERFAMILY Pectin lyase-like 265 572 IPR011050 -
Aip06g00767 578 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 211 IPR006501 GO:0004857
Aip06g00767 578 PANTHER PECTINESTERASE 31 575 - -
Aip06g00767 578 PANTHER PECTINESTERASE 31 575 - -
Aip06g00767 578 SMART PMEI_2 54 211 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00767 Aip-Chr6 10226409 10228563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00767 30 570 Carbohydrate Esterase AT3G62170 37.955 7.86e-122 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00767 K01051 - gmx:100808559 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00767 06 10226409 10228563 Aip09g01370 09 23952032 23955788 PCT
Aip09g01371 09 24011862 24014007 Aip06g00767 06 10226409 10228563 PCT