Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00713 ATGTCGAAGAGGAAGTTCGGATTTGACGGTTTCGGCATAAACCGCCAATCCACCTACAACTTCGAGCGATCCCAAGCTCCTCAGCGCCTCTACGTCCCTCCCTCTTCACGCCACGGCCACGACAATTACGAGGACACCGACCTCGACAACATCGATTACGACGACAACGACGCCGCCGGAAACGACAACAAAGCTGCCGGCGATGGCGGAGGTGGCAATAATGGTGGCGACGAGGAAATCGATCCGCTCGACGCCTTCATGGAAGGGATTCACGAAGAGATGAGGACGGCGGTGCCTCCGAAGCCAAAGGAGAAGGCGGAGGACAGGTACAAGGACGATGAGGAGGATGATCCAATGGAGAGCTTCTTGAGGGCGAAGAAGGACCTAGGGTTGACGTTGGCCTCGGAGGCTCTGCACGCTGGCTACGATTCTGATGAAGAGGTTTATGCTGCTGCTAAGGCTGTGGATGCCGGTATGATAGAGTATGATTCTGATGATAATCCTATAGTTCTTGACAAGAAGAAGATCGAACCCATTCCTGCACTTGATCACAGTTCTATTGATTATGAGCCCTTCAATAAGGATTTCTATGAGGAGGCACCTTCAATTTCAGGTATGAGTGAGCAAGATGTCACTGAATACCGGAAGAGTTTGGCTATTCGTGTGTCGGGATTTGATGTGCCTAAGCCAATAAAGACATTTGAGGACTGTGGGTTCTCTCAGCAAATTATGGGTGCTATAAAGAAACAAGGTTATGAGAAACCAACGTCTATACAGTGCCAAGCTTTACCAGTTATTCTTTCCGGTAGAGATATCATTGGCATTGCAAAAACTGGTTCTGGAAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAGCTTCAGAAGGAAGAGGGTCCTATAGGAGTTATATGCGCACCTACAAGAGAATTGGCACATCAGATATATCTTGAGTCCAAGAAATTTGCAAAAGCATATGGTATACGTGTGTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGCAGGTTGTGAGATAGTAGTTGCCACCCCTGGGAGGTTGATAGACATGCTAAAAATGAAGGCATTGACAATGACTAGAGCAACTTACCTGGTGCTTGATGAGGCTGACCGGATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATTAGGCCGGATCGCCAGACTTTACTTTTTTCTGCGACAATGCCTCGTAAAGTTGAAAAGTTGGCTAGAGAGATCCTTAGTGATCCTGTTAGAGTAACAGTTGGGGAGGTGGGAATGGCAAATGAAGACATTACTCAAGTTGTCCATGTAATTCCTTCTGATGCTGAAAAATTGCCTTGGCTTTTGGAGAAGTTGCCCGAGATGATCGATCAAGGTGATGTCCTAGTATTTGCTTCCAAGAAGGCTACTGTGGATGAAATTGAATCACAATTGGCTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCGTCTCGCATGGAAACTTTGCAGAAGTTTAAAGCTGGTGTCTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGATATCAAGTCAATTAAATCTGTGGTGAACTTTGATATTGCAAAAGATATGGATATGCATGTCCATCGGATTGGGAGAACAGGCCGTGCTGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCAAAAAGAAGCACGCTTTGCTGGCGAACTGGTTAATAGCTTGATTGCTGCTGGTCAGAATGTATCCATGGAGTTGATGGATCTTGCTATGAAGGATGGGAGGTTCAGGTCAAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAAAGGGAGAGGAGGTGGTGGTGGTGGTGGCGGTGGCCGGGGTGTGCGTGGAGTTGATTTTGGCCTTGGTATTGGATATAATCCCGAGTCCAACAGTGCTTCATCTAACACCCCTCCGAGCCGCTCTGCTGCTGTAAATTCTTTACGAACAGGAATGATGTCACAGTTTCGGAGTAGCTTTGTTGCTGCTTCCTCTAACTCCCAAAATCAAGGATATACTAACAATACAAGTATGGCTGCAAATAAGAGACCTGCACTTCGCGGTTTTGTATCTGGTGGATCAATTGGCGGGGATATAACTTCTCATAATAATGCTGCTTCACCCAGTCCTGCTATAGCAGCAGTAAACTCCGGTGGCCCAAATTCCGGTGTAAACCCTGCTCAGAACAACTCAAACAGCTCTAAACCCAGAGAAAGGAGGAGGCCATCAGGCTGGGATAGATCCGATATGTCGATCAGATTCGCCCTATGCTTATCGTTCTTCATCGCACTTCATTCTATTTCAGCTGCTTCTGCTGATTCCATCTATGGCTGCGGCGGCTTCGTCGAGGCGAGCTCATCGCTGGTAAAATCGAGGAGGCAAAGTGATTCCAAATTGGATTATTCTCATGTCACGGTTGAGCTTCAAACAGTGGATGGACTTGTAAAGGATAGAACACAGTGTGCTCCAAATGGATACTACTTTATTCCAGTTTATGACAAGGGTTCCTTTGTAATTAAAATTAATGGACCTGAAGGATGGGCATGGGATCCAGAGAAGGTTCCAGTGGTGGTTGATGATAAAGGTTGTAATGGTAATGAAGATATCAATTTTCATTTCACAGGGTTTACTATATCTGGTAGAGTTGTTGGAGCTGTAGGTGGAGGAAGCTGTTCAGTTAAAAATGGTGGTCCTTCAAATGTAAAAGTTGAGCTATTGTCCCCTGCTGGGGATGTTGTCTCTGCTGTCTTAACTTCTCCATCAGGGAATTACTTGTTTAAAAATATAATTCCAGGAAAATATGAACTACGAGCTTCAAGTCCTAATATGAAAGTTGAAGTTAAAGGTTCAACCCAGGTGGAGTTGGGCTTTGGAAATGGTGTAGTTGATGATGTGTTCTTTGTCCCTGGCTATAGTATCAGTGGTTTTGTTGTTGCTCAGGGAAATCCAATATTAGGGGTACATGTTTTCCTATATTCAGATGATGTTTCTGAGATAGAATGTTTACAAGGTTCTCCAAATGGTCCACGAGAAGGGGTAGCTCTCTGTCATGCTGTGTCAGATGCTGATGGAAAGTTCACATTCAATTCTGTACCTTGTGGAAGTTATGAACTTGTACCTTACTATAAGGGTGAAAATACAGTATTTGATGTTTCACCGTCCAGCGTCTCGGTTAATGTTAAGCATCAACATGTAACGGTGCCTCAGAAATTCCAGGTAACTGGGTTTTCTCTTGGAGGCCGTGTGGTTGATGGAAATGAAATGGGAGTGGAGGGTGTTAAAATCATAGTGGATGGTCATGAAAGGTCTATTACGGATAATCAAGGATATTATAAGCTTGATCAGGTGACATCCAAGCATTATACCATTGAAGCCAAAAAGGAGCATTACAAATTCAGGAAGTTGGAGAATTATATGGTTTTGCCAAATATGGCTTCAATAGAAGACATTAATGCCATTTCATATGACCTTTGTGGCTTAGTTAGGTCAGTTAGTGGTGGTCCGAAAGCCAAGGTGGCTTTGACTCATGGACCCGAGAATGTGAAACCACAAAAGAAGCAAACAGATGGAAATGGAAGATTCTGCTTTGAGGTTGTGCCTGGTGAATATCGGTTATCAGCTATTGCTGAGAATGCACCTGGGCTCATGTTTATGCCGTCATATATTGATGTTGTGGTCAAAAGTCCATTGTTAAATGTAGAATTTTCACAGGCTCTGGTCAATATTCGCGGTGCTGTATCCTGCAAGGAGAAATGTGGTCCATCCGTATCTGTTACTCTTGTCAGAAAGGTTGACAAACATAATGAAGATAGAAAGACAATTAAATTGACCACCGAGAGTAGTGAATTTCTGTTTTCAGATGTTATTCCTGGAAAGTATAGGCTTGAGGTCAAACATAGTTCTCCTGAAGCAGTGACTTCAAAGGATGATTGGTGCTGGGAGCAGAGCTTCATTGATGTAAATCTTGGAGCCGAGGACTTAGAAGGAATTACATTTGTTCAGAAAGGCTACTGGGTCAATATTATCTCAACTCATAATGTTGATGGTTACTTGACTCAACCCGATGGGTCAAATGTGAATTTGAAGATCAAGAAAGGTTCCCAGAATATATGTGTAGAATATCCAGGAGTACATGAATTTAAATATGTAGACTCGTGTGTCTTCTTTGGGAGCTCATCTGTGAAAATTGATACATCTGTTCTGTCGCCTGTCCATCTAAAAGGAGAGAAGTATCTTCTTAAAGGACAAATAAATGTGCAGCCCAGCTCACTTGATTCATTACCCAAGAACATAGTTGTGGACATTAAAAATGGTGGAGCTGGTGGTGTTGATTCTGCTACAGCCAAACTTAAATCCCATGAAAAAGATCAAACAAATACTGCTATCTACGAGTACTCTGTTTGGGCCAATCTTGGAGAAAAGCTTACCTTTATTCCTCGGGACTCAAGGAATGATGGGGAGAAAAAACTTCTGTTTTACCCTAGAGAGCATCATATATCAGTGGCAGATGATAATTGTCAAACTTATATTCCTACATTTTCTTCTCGACCGGGAGTATATATTGAAGGATCAGTTTCTCCTCCTCTTTCTGGAGTCCATATCAGGCTTGTTGCAGCTGGAGATAGTAGCATTACTGCACTTAAAAGTGGTGAAATAGTACTTGAAACATCAACTGGGGCTGATGGCAACTTTGTGGCAGGTCCTCTGTATGATGATGTTGGTTACAATGTTGAAGCCTCAAAGGCATGTTGTTATATTTTGTTTTTCCCATTATTGCCATTATGTTTTCTTACATTTATTCCTGGGAAAAGGCCTTATTCCTTTAGTTGTCAGAAGCTTAGTCAAATTTCAGTGCGTATACATCACAAAGATGATGTTAGAGAACCCATTCCTTCTGTTCTGCTATCTTTGAGTGGTGACAATGGTTATAGAAACAACTCGGTATCTGGTGATGGAGGGTCATTCCTGTTTGATAATTTGTTTCCTGGAACATTCTATTTGCGTCCTGTTTTGAAGGAGTATGCTTTCTCACCTTCAGCACAGGCAATAGAGCTTGGAGGAGGGGAATTTAAAGAAGTTGTTTTTCAGGCGACTCGTGTAGCTTACAGTGCTACTGGCTTCGTCACACTGTTGTCTGGCCAGCCCAAAGGAGGAGTGTCAGTTGAAGCTCGGGCAGAGTCAAAAGGTTATTTCGAGGAAGCTGTGACAGATTCTTCTGGGAATTACCGTCTCAGAGGACTACTGCCTGATACAGTCTATGCTGTTAAAGTAGCTAAAAGGGATGTTCTAGGCAGTTCAAACATAGAGCGTGCATCTCCTAATTCTATTCCTGTCAAGGTTGGAACTGAGGATATCGGGGGTTTAGATTTCGTAGTTTTTGAGGAGCCAGAAATTACAATTGTTAGTTGCCATGTTGAAGGAAATGGTACGAAGGAACTGCATAAACACCTGATGGTAGAAATTAAGTCAGCTAGTGACCCAAATAAGATAGAGTCTGTCTTCCCCCTACCAATTTCTAACTACTTTCAAGTGAAGGGTTTATCTAAAGGCAGACACCTTCTGCAACTCCGGTCTGGCCTCCCTTTGGGTTCCCTTAAATTTGAATCCGATATCATTGAGGTAGATTTGGAGAAAGATACTCAAATCCATGTAGGCCCACTGAGATACAAGATCGACGATCAGATGAAGCAGGAGCTGACGCCCGCACCAGTATTCCCTCTTATAGCTGGATTATTTTTCATTGCACTATTCCTCAGCATTCCAAGATTGAAGGATCTGTATCAAGCAACTGTAGATATACCCACACCAGGACTCACTGCTACTTCAAGAAAAGACACAAGGAAGACAACGATGCGGAAGAAGACATATTAG 5967 0.4327 MSKRKFGFDGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNDAAGNDNKAAGDGGGGNNGGDEEIDPLDAFMEGIHEEMRTAVPPKPKEKAEDRYKDDEEDDPMESFLRAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVLDKKKIEPIPALDHSSIDYEPFNKDFYEEAPSISGMSEQDVTEYRKSLAIRVSGFDVPKPIKTFEDCGFSQQIMGAIKKQGYEKPTSIQCQALPVILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLESKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPEMIDQGDVLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMETLQKFKAGVYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGGGGGRGVRGVDFGLGIGYNPESNSASSNTPPSRSAAVNSLRTGMMSQFRSSFVAASSNSQNQGYTNNTSMAANKRPALRGFVSGGSIGGDITSHNNAASPSPAIAAVNSGGPNSGVNPAQNNSNSSKPRERRRPSGWDRSDMSIRFALCLSFFIALHSISAASADSIYGCGGFVEASSSLVKSRRQSDSKLDYSHVTVELQTVDGLVKDRTQCAPNGYYFIPVYDKGSFVIKINGPEGWAWDPEKVPVVVDDKGCNGNEDINFHFTGFTISGRVVGAVGGGSCSVKNGGPSNVKVELLSPAGDVVSAVLTSPSGNYLFKNIIPGKYELRASSPNMKVEVKGSTQVELGFGNGVVDDVFFVPGYSISGFVVAQGNPILGVHVFLYSDDVSEIECLQGSPNGPREGVALCHAVSDADGKFTFNSVPCGSYELVPYYKGENTVFDVSPSSVSVNVKHQHVTVPQKFQVTGFSLGGRVVDGNEMGVEGVKIIVDGHERSITDNQGYYKLDQVTSKHYTIEAKKEHYKFRKLENYMVLPNMASIEDINAISYDLCGLVRSVSGGPKAKVALTHGPENVKPQKKQTDGNGRFCFEVVPGEYRLSAIAENAPGLMFMPSYIDVVVKSPLLNVEFSQALVNIRGAVSCKEKCGPSVSVTLVRKVDKHNEDRKTIKLTTESSEFLFSDVIPGKYRLEVKHSSPEAVTSKDDWCWEQSFIDVNLGAEDLEGITFVQKGYWVNIISTHNVDGYLTQPDGSNVNLKIKKGSQNICVEYPGVHEFKYVDSCVFFGSSSVKIDTSVLSPVHLKGEKYLLKGQINVQPSSLDSLPKNIVVDIKNGGAGGVDSATAKLKSHEKDQTNTAIYEYSVWANLGEKLTFIPRDSRNDGEKKLLFYPREHHISVADDNCQTYIPTFSSRPGVYIEGSVSPPLSGVHIRLVAAGDSSITALKSGEIVLETSTGADGNFVAGPLYDDVGYNVEASKACCYILFFPLLPLCFLTFIPGKRPYSFSCQKLSQISVRIHHKDDVREPIPSVLLSLSGDNGYRNNSVSGDGGSFLFDNLFPGTFYLRPVLKEYAFSPSAQAIELGGGEFKEVVFQATRVAYSATGFVTLLSGQPKGGVSVEARAESKGYFEEAVTDSSGNYRLRGLLPDTVYAVKVAKRDVLGSSNIERASPNSIPVKVGTEDIGGLDFVVFEEPEITIVSCHVEGNGTKELHKHLMVEIKSASDPNKIESVFPLPISNYFQVKGLSKGRHLLQLRSGLPLGSLKFESDIIEVDLEKDTQIHVGPLRYKIDDQMKQELTPAPVFPLIAGLFFIALFLSIPRLKDLYQATVDIPTPGLTATSRKDTRKTTMRKKTY 1988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00713 1988 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 384 392 IPR000629 -
Aip06g00713 1988 MobiDBLite consensus disorder prediction 732 765 - -
Aip06g00713 1988 MobiDBLite consensus disorder prediction 93 117 - -
Aip06g00713 1988 CDD DEADc_DDX42 243 439 - -
Aip06g00713 1988 Pfam Helicase conserved C-terminal domain 468 572 IPR001650 -
Aip06g00713 1988 MobiDBLite consensus disorder prediction 617 646 - -
Aip06g00713 1988 Gene3D - 445 625 IPR027417 -
Aip06g00713 1988 Pfam DEAD/DEAH box helicase 256 427 IPR011545 GO:0003676|GO:0005524
Aip06g00713 1988 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 232 260 IPR014014 GO:0003724
Aip06g00713 1988 SUPERFAMILY Cna protein B-type domain 927 978 - -
Aip06g00713 1988 MobiDBLite consensus disorder prediction 13 31 - -
Aip06g00713 1988 CDD SF2_C_DEAD 450 582 - -
Aip06g00713 1988 Gene3D Immunoglobulins 924 988 IPR013783 -
Aip06g00713 1988 Gene3D - 195 442 IPR027417 -
Aip06g00713 1988 MobiDBLite consensus disorder prediction 1 81 - -
Aip06g00713 1988 PANTHER CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING 784 1979 - -
Aip06g00713 1988 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 263 438 IPR014001 -
Aip06g00713 1988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 610 IPR027417 -
Aip06g00713 1988 SMART helicmild6 491 572 IPR001650 -
Aip06g00713 1988 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 612 IPR001650 -
Aip06g00713 1988 PANTHER NODAL MODULATOR 1-RELATED 784 1979 - -
Aip06g00713 1988 SMART ultradead3 251 453 IPR014001 -
Aip06g00713 1988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 441 IPR027417 -
Aip06g00713 1988 SUPERFAMILY Cna protein B-type domain 1659 1713 - -
Aip06g00713 1988 SUPERFAMILY Starch-binding domain-like 999 1090 IPR013784 GO:0030246
Aip06g00713 1988 SUPERFAMILY Carboxypeptidase regulatory domain-like 1108 1175 IPR008969 -
Aip06g00713 1988 MobiDBLite consensus disorder prediction 732 777 - -
Aip06g00713 1988 Gene3D - 1113 1186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00713 Aip-Chr6 9440990 9459673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00713 232 589 Eukaryotic Initiation Factors Gene Family AT3G13920 34.903 1.09e-60 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00713 - - ccaj:109814730 1989.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00713 06 9440990 9459673 Aip06g00713 06 9440990 9459673 ECH