Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00689 ATGAATTATTCCTCCAAGAATTTAGCAAGATTTATAAATTCAGCTCTCCATGCTACCAACATCTCATTTTCTGACATTAAAACCAAGGTTGCTCCATTATTATTTGAATCATTTGAGACAGTTCCTCAATTAGCCGAAATCTCATACATAGGAATGGAAGGTTACTTTTTTTCATTCTACAATGGTGATCATGGTCAACCTCTCGCAATATACTCAAATCGTTCAACATCTTCTTCCATTATTTCTAAGCATTATTATGTTCAGCCGGTGAATCCTGACAATGGAAAATTATATGGGAATGCAACAATATTTGATTCCTATGTTAATACAACTTGGGTTGGGAAAGCACTAAATGGTTCGAATGATGGATTTGTCACATTGGGAAAAAAGTTTAGCAATGATCAAGAATTCTTGTTCATTAGTTCATCAAGAATCACAAAAACAGGTTCAGTGATCTCTCTTGGAGTTCAAGCAACAAAAATAACTGGTTTTTTCTCTAGTGTTATCAGTCATCACCAACAAGGTGCCATGTTGTATCTAGCTACAAAAGATGGACAAGTGCTTCAAGAAGGGATCAAGAATACTCATATGGTTGTTGCTAAGAACAACACGGTTTCGTTTCAATATGTGAATAATCACACTAGTTATTATCAGGGTTCAGTTACATGCAAAAATGATGGTGAAGTTGTTGCTTCTACTTTGAAGATTCAGGGCGTTGAGTATTTAATGCACTGCTCCTCAATTCAGATAATGGGGATTAAATTGGTGTATGTTGTGGGAGTGCCAAAAAATGGAGCAATGATCAATTTCATAAAGGAATTTAAGAGATATGGGTTGATGGTACTGAGTGCCATGGTGATTATGTCCTTAATTGGCACAATTAGCATTGTAATTATGAAAAAGGCAGTAAAGAAGCAAAAAGAAGCAACGGAGGAAGCTGAGAGAAAGAGTAAGAATAAGAGCATTGCTTTTGCGACAGCATGCCATGATGTTCGTGCTTCCCTCGCAACCCTGACTGGTTTGATAGAGTTGTCATCTTCACAACTTGTCCCTTCTTCATCAGAACTAAACTCCAATCTCAAACAAATGGACTCTTGTACCAAGGATTTACTAGGAATGCTGAATTCCATATTGGATGCAAGCAAGATTGAAGCAGGGGAAATGCAACTTGAGGAAGAAGAATTTGATGTGTTCCAATTCTTAGAGGAGGTAGTTGATTCTTACCATAACGTGGCTATGAAGAAAGGAGTAGATATTGTATTGGAACCCTTCAATGACTCAGTTCACAGATATTCACACACAAAAGGTGACAGAGTTAAACTCAAGAGAGTCTTATGCAACTTATTAGACAATGCTGTTAAATTCACTGATGAAGGACACATAGCAGTTAGGGTAAGGGCACAGAAACCTGTATTGCAAAACTCAATGTCAATGATGAGGGTTACTAACCAAAATAGACCTTGGTCATGCTTATTCATCAAAAGAAAAAATAATGAACGACGGAATGATGATGACATAGAAGCTTCTAATTCAACCCAACCAGATCCTAGTAATACCATGGATTTCATATTTGAAGTTGAAGATACTGGCAAAGGAATTCCCAAAGACAAGCATGAGTCTGTGTTTGAGAATTATGTCCAAGTCAAAGAAACTGCTATTGACCATGGTGGAACTGGTTTGGGACTTGGCAGTGTGAGATCTTTGGTTCGATTGATGCATGGAGATATTAGAATTGTGGAGAAGGATAATGGTGGAAAAGGAACATGTTTCAGGTTCAATGTGCACCTCACTGTATGTGAGAAAAGAACAGATGATATCACAAGAGAAAGTGAATCTAAACCAGTTGACAGAACTCAATCACACAGGTCAACCATTCATGCTACTAGTTCTGGTTCAAGCATGTGTTCCTTGAGTCCCAAGATACCTATCTGCGGCCCTAGCACTTCTTGGCACGAGGGATCTCGAGTTGTTCTCTTGATTCAAGGAGAAGAGCGCCGAAGAGCAACACAAAGGTTCATAGAGAGAAAAGGGATCAAAGTTAAGGTTGTTAAGCAGTGGACTAATCTGTCTCATACCCTCAATAAGATAAAAAAGAAGGGTCTGAATAGCTTAAGTTCAGGTTCTAGTTCTAGTTCTGCAACACATGGTTCTACTAATGCCCCTTTGAGTGCATCCATGGATGAAATCGAATCTACCCAAGGATTCGTCCTGATTGTGATTGATGCAAAAGCAGGACCATTTCAAGAACTATGCAGGGTGGTATCTGAATTCAAGAGAGGCATTTGTATTTCTTGTAGAGTTGTTTGGTTAGAGAATCCAATTTCTCCTAATCTTGATTTCAATAGCCTAAATGAGGATGATTATGACCCCAATGACATTGTTCTTCATAAACCATTACATGGTACCTCTTTGTTCCAAGTTTTAAGTCTTCTTCCAGAGTATGGTGATGGATCAATGAGAGGAAGTGGGTCAATACTAGCTTCCTCAAGTACAATTCAAAGAGCTGAACTAGAAAAGTGCGGCACTTCAAGGTCAAGGAGTGGGAAGGAACCACAACAATCCATTGGAGATCAATCTCATGATCAAGGAGGAACAAAAGAGTGTGAAGTTCCAAGAAGCAGTGACAAGCCCTTGAGTGGTAAGAGAATTATGGTGGTTGAAGACGATAACACGATCCGCAAGATAGCTTCTGCTTCTTTGGAACAGCTTGGTGCTTCTGTTGAGAAATGTGAGAATGGTGAACAAGCTGTGGAGCTAGTTAAAGAGGGTCTAGCTAGAGATTTTCCAAATCTTCCATATGATTACATCTTTATGGACTGCCAGATGCCAGTGATGAATGGATACGAGGCAACAAGGCTAATAAGAGAGATAGAGAAGGAGTATAACATTCACATTCCTATATTTGCATTAACTGCTAATACTCAGGAAGAGACAAACCCATTAGAAGCTGGAATGGACCATCACTTAGTCAAACCCATTGACAAAAAGGGTTTGCTTGAAGCCATCACAAAAGTACACGATAGAGTTGCCATTAGAGAGTGA 3042 0.3889 MNYSSKNLARFINSALHATNISFSDIKTKVAPLLFESFETVPQLAEISYIGMEGYFFSFYNGDHGQPLAIYSNRSTSSSIISKHYYVQPVNPDNGKLYGNATIFDSYVNTTWVGKALNGSNDGFVTLGKKFSNDQEFLFISSSRITKTGSVISLGVQATKITGFFSSVISHHQQGAMLYLATKDGQVLQEGIKNTHMVVAKNNTVSFQYVNNHTSYYQGSVTCKNDGEVVASTLKIQGVEYLMHCSSIQIMGIKLVYVVGVPKNGAMINFIKEFKRYGLMVLSAMVIMSLIGTISIVIMKKAVKKQKEATEEAERKSKNKSIAFATACHDVRASLATLTGLIELSSSQLVPSSSELNSNLKQMDSCTKDLLGMLNSILDASKIEAGEMQLEEEEFDVFQFLEEVVDSYHNVAMKKGVDIVLEPFNDSVHRYSHTKGDRVKLKRVLCNLLDNAVKFTDEGHIAVRVRAQKPVLQNSMSMMRVTNQNRPWSCLFIKRKNNERRNDDDIEASNSTQPDPSNTMDFIFEVEDTGKGIPKDKHESVFENYVQVKETAIDHGGTGLGLGSVRSLVRLMHGDIRIVEKDNGGKGTCFRFNVHLTVCEKRTDDITRESESKPVDRTQSHRSTIHATSSGSSMCSLSPKIPICGPSTSWHEGSRVVLLIQGEERRRATQRFIERKGIKVKVVKQWTNLSHTLNKIKKKGLNSLSSGSSSSSATHGSTNAPLSASMDEIESTQGFVLIVIDAKAGPFQELCRVVSEFKRGICISCRVVWLENPISPNLDFNSLNEDDYDPNDIVLHKPLHGTSLFQVLSLLPEYGDGSMRGSGSILASSSTIQRAELEKCGTSRSRSGKEPQQSIGDQSHDQGGTKECEVPRSSDKPLSGKRIMVVEDDNTIRKIASASLEQLGASVEKCENGEQAVELVKEGLARDFPNLPYDYIFMDCQMPVMNGYEATRLIREIEKEYNIHIPIFALTANTQEETNPLEAGMDHHLVKPIDKKGLLEAITKVHDRVAIRE 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00689 1013 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 307 387 IPR036097 GO:0000155|GO:0007165
Aip06g00689 1013 SMART HisKA_10 319 386 IPR003661 GO:0000155|GO:0007165
Aip06g00689 1013 MobiDBLite consensus disorder prediction 846 861 - -
Aip06g00689 1013 PRINTS Bacterial sensor protein C-terminal signature 540 550 IPR004358 GO:0016310|GO:0016772
Aip06g00689 1013 PRINTS Bacterial sensor protein C-terminal signature 556 574 IPR004358 GO:0016310|GO:0016772
Aip06g00689 1013 PRINTS Bacterial sensor protein C-terminal signature 522 536 IPR004358 GO:0016310|GO:0016772
Aip06g00689 1013 PRINTS Bacterial sensor protein C-terminal signature 582 595 IPR004358 GO:0016310|GO:0016772
Aip06g00689 1013 Gene3D - 858 1010 - -
Aip06g00689 1013 Coils Coil 296 320 - -
Aip06g00689 1013 PANTHER HISTIDINE KINASE CKI1-LIKE 1 1005 - -
Aip06g00689 1013 MobiDBLite consensus disorder prediction 862 881 - -
Aip06g00689 1013 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1005 - -
Aip06g00689 1013 SUPERFAMILY CheY-like 877 1008 IPR011006 -
Aip06g00689 1013 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 436 597 IPR003594 -
Aip06g00689 1013 MobiDBLite consensus disorder prediction 607 633 - -
Aip06g00689 1013 SMART HKATPase_4 436 598 IPR003594 -
Aip06g00689 1013 MobiDBLite consensus disorder prediction 837 881 - -
Aip06g00689 1013 SMART REC_2 881 1002 IPR001789 GO:0000160
Aip06g00689 1013 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 375 594 IPR036890 -
Aip06g00689 1013 ProSiteProfiles Response regulatory domain profile. 882 1006 IPR001789 GO:0000160
Aip06g00689 1013 CDD REC_hyHK_CKI1_RcsC-like 883 1002 - -
Aip06g00689 1013 Pfam Response regulator receiver domain 883 1002 IPR001789 GO:0000160
Aip06g00689 1013 Gene3D - 385 604 IPR036890 -
Aip06g00689 1013 ProSiteProfiles Histidine kinase domain profile. 326 598 IPR005467 -
Aip06g00689 1013 Gene3D - 297 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00689 Aip-Chr6 9164511 9168581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00689 2 995 Histidine Kinase Gene Family AT2G47430 37.465 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip06g00689 HATPase_c 2.5e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00689 - - aip:107646610 1958.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00689 06 9164511 9168581 Aip06g00689 06 9164511 9168581 ECH