Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00652 ATGTGTGGCGGTGCCATAATCGCTGAGTTCATTCCCCGCAACCGTACTCGCCGACTTACTGCCTCTGAAATCTGGCCCAACACATTCTCTAACAATCAAGTCGACGACTTTGACTTCGATTTTTCTCATCATCATCTCAAAAACACACCCACTCTCAACAAATCTTCTTCGCCTTCAGTTGGTGAGCAAGATCAGGAGAACAGCAAGCCCCCCGCGAAGAGGCAGAGGAAGAACCTTTACAGAGGGATCAGGCAGCGTCCATGGGGAAAATGGGCGGCGGAAATTCGTGATCCGAGAAAAGGTGTTCGCGTTTGGCTTGGAACCTTCAACACCGCCGAAGAAGCCGCCAGGGCTTACGACAGAGAAGCTCGTAAGATTCGCGGAAAGAAAGCTAAAGTGAACTTCCCCAACGAGGATGACGAATACTCCATTCAACAATCTCGCAACATTATTCCAAACATTCCTCCTCCGATTCGACGATCGAGTAATCATCCTCCTCTGTATCAATATGGTGATGCCAACAACAACAGCAACAACAATATGAACAACCAGGCAAGGACTCTGAACCTCAACTTGGAGTTTGGTTACGATCTGAACCATGGAGGAGCCGTTGGCGTTGGTGATGCCATCAACGCAGACCCATTTGTGAGTTGTGTTGATCAGAATTCTGAGTATGGGTCTGGTTCTGGCTCGGCGTCGGAGGTGGCAGGTGGGTCAAGTGGTGATCAACAACATCAAGAGGAGAAGAAGAGCTACGAGGTGGAGAAGCTTTCGGAGGAGCTAATGGCATATGAGAACTACATGGGGTTTTATGATCAAATGCCCTTCTATGATGCACAATCTGCTGTCGCCGCTGTCGCCGCTGCCAACAACAACAACAACGTTGTTCAGGAAAGTGTGGTTGGGGAACTTTGGACCTTCGATGAATGA 930 0.4914 MCGGAIIAEFIPRNRTRRLTASEIWPNTFSNNQVDDFDFDFSHHHLKNTPTLNKSSSPSVGEQDQENSKPPAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQQSRNIIPNIPPPIRRSSNHPPLYQYGDANNNSNNNMNNQARTLNLNLEFGYDLNHGGAVGVGDAINADPFVSCVDQNSEYGSGSGSASEVAGGSSGDQQHQEEKKSYEVEKLSEELMAYENYMGFYDQMPFYDAQSAVAAVAAANNNNNVVQESVVGELWTFDE 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00652 309 CDD AP2 80 137 IPR001471 GO:0003700|GO:0006355
Aip06g00652 309 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Aip06g00652 309 MobiDBLite consensus disorder prediction 226 252 - -
Aip06g00652 309 PANTHER EREBP TRANSCRIPTION FACTOR 1 272 - -
Aip06g00652 309 MobiDBLite consensus disorder prediction 226 242 - -
Aip06g00652 309 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Aip06g00652 309 PANTHER DNA-BINDING DOMAIN 1 272 IPR044808 GO:0003700|GO:0009873
Aip06g00652 309 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Aip06g00652 309 MobiDBLite consensus disorder prediction 48 80 - -
Aip06g00652 309 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Aip06g00652 309 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Aip06g00652 309 MobiDBLite consensus disorder prediction 48 66 - -
Aip06g00652 309 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Aip06g00652 309 Pfam AP2 domain 80 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00652 Aip-Chr6 8496108 8497609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00652 1 137 AP2-EREBP Transcription Factor Family AT3G16770 55.714 6.75e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip06g00652 AP2 9.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00652 K09286 - gmx:100819416 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00652 06 8496108 8497609 Aip06g00652 06 8496108 8497609 ECH