Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00639 ATGGGCCGTGAGAACGGTTACAAACGTGATGATGAGACAAGTTCATCAGAGAACCAAAAAGAAACAGTTCCATACTTCAAGCTGTTCTCGTTTGCAGATTCCACTGACATCTTGTTGATGATTGTTGGGACCATTGCCGCCATTGGAAATGGTATGGGAATGCCTCTCATGACATTAATATTTGGCCAAATGGCAAACGTCTTCGCTGATAACCTGTACAGTGAAGATATTGTCAACCAAGTTTCCAAGATCAGTCTGAAATTTGTGTACTTGGCAATAGGCATAGGTGTTGCAGCATTCCTTCAGGTGGTATGTTGGATGGTGACAGGGGAAAGACAAGCTGCAAGAATAAGGGGTTTGTACTTGAAGACTATTCTAAGACAAGATATTGCTTTCTTTGATAAAGAGACAAACACTGGTGAGGTCATAGGTAGAATGTCAGGTGACACAGTCCTTATTCAAGATGCCATGGGTGAGAAGGTTGGGAAATTTGTGCAGTTAATTGCAACATTTGTTGGAGGGTATGTGATATCATTTGTCAGAGGGTGGCTTCTAACTCTTGTCTTGTTGTCTGCTCTTCCAATTCTCGCTATAGCTGGCGCAGCTTTGGCCATCACCATAGAAAAGATGGCAACCATAGGTCAAAATGCTTATGAAAAAGCAGCACATGTAGTTGAACAGACAATAGGTTCTATAAGAACAGTTGCATCCTTCACTGGGGAAAAGCAAGCAGTATCTAGTTATGAAAAACGTCTTGAAGATGCATACAAATCAGGAGTTAGCGAAGGCATAGCAGCTGGAATGGGTTTTGGCGTTGTTACCTGTGTCATTTTTTGCGGTTATGCTTTGGCTGTATGGTATGGTTCAAAGATGATAATGGAAAAAGGATATAATGGGGGTATGGTGGTCAATGTCATGGTTGCTGCGTTAAGTGCTTCCATGTCTCTTGGGGAAGCAAGTCCTTGCTTAAGTGCTTTTGCTTCGGGTAAAGCAGCAGCCTATAAAATGTTTCAAACAATTGAGAGAAAGCCTGAGATTGATGCTTATGATCCTACTGGAAAAACATTGGAAGATATTCATGGCGATATAGAGTTGAGGGATGTCTATTTCAGTTATCCGGCCAGACCCGAGGAGCTGATATTCAACGGATTCTCTCTGCATATTCCAAGTGGCACAACTGCGGCTTTAGTAGGACAAAGTGGAAGTGGGAAGTCCACAGTTATCAGTTTGATGGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGCATTAACATTAGAGAATTTCAGGTTAGATGGATAAGAGGAAAAGTTGGCCTTGTCAGCCAGGAGCCAGTGTTGTTTGCATCTAGCATCAAGGATAACATTGCTTATGGAAAGGAGGGAGCAACAATCGAAGAGATTAAAGTTGCAACTGAACTTGCAAATGCTGCTAATTTCATTGATAAACTGCCAAAGGGATTGGAAACAATGGTTGGTGAGCATGGAACACAACTATCTGGTGGACAGAAGCAACGCATTGCCATTGCAAGAGCTATCCTAAAAGATCCAAGGATTTTGCTTCTAGATGAAGCCACAAGTGCACTTGATGCAGAATCTGAAAGAATAGTGCAAGAGGCCCTAGACAGGATCATGATCAACAGAACTACTGTTATTGTAGCTCATCGCCTAAGCACTGTGAAGAATGCAGACATGATTGCTGTAATTCATAGAGGGAAAATGGTTGAGAAAGGAACACATGTTGAATTAGTCAAGGACCCCGAAGGAGCTTACTCTCAGCTAATACGTTTACAAGAGGTAAGAGAGGAGGATTCATTAAAGAATGCAGACAATCAAAACAAGTCTGAACTCTCAAAAAGTAAAAGGTGGTCATTTCAAAGATCAGAATCATCTGTTGGTAGCAGTTGCCGCCACTCGACTTCCTTCGGCTTACCTACAGGAGCTAATATCCTTGATCCTAAAGTTGAAACTCCAAGAGAAGAGGATGTACCATCACAAGAGGTTCCACTATGGTGGCTTTTTTCCCTTAACAAACCAGAGATTCCAGTGCTTCTTATGGGATCTATAGCTGCCACAGCAAATGGTGCTATATGGCCAGTGTTTGGTTTGTTGCTTTCTAGTGCCATCAAAACATTTTATGAACCATTCAATGAGTTAAAGAAGGACTCAAAATTTTGGGCACTAATGTTTGTGACCCTTGGACTTGCATCTTTAATTGCTCTTATAGCAAGAGGATACTTTTTCTTGTGGCTGGCCATAAGCTAA 2274 0.4173 MGRENGYKRDDETSSSENQKETVPYFKLFSFADSTDILLMIVGTIAAIGNGMGMPLMTLIFGQMANVFADNLYSEDIVNQVSKISLKFVYLAIGIGVAAFLQVVCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFVQLIATFVGGYVISFVRGWLLTLVLLSALPILAIAGAALAITIEKMATIGQNAYEKAAHVVEQTIGSIRTVASFTGEKQAVSSYEKRLEDAYKSGVSEGIAAGMGFGVVTCVIFCGYALAVWYGSKMIMEKGYNGGMVVNVMVAALSASMSLGEASPCLSAFASGKAAAYKMFQTIERKPEIDAYDPTGKTLEDIHGDIELRDVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLMERFYDPQAGEVLIDGINIREFQVRWIRGKVGLVSQEPVLFASSIKDNIAYGKEGATIEEIKVATELANAANFIDKLPKGLETMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTVKNADMIAVIHRGKMVEKGTHVELVKDPEGAYSQLIRLQEVREEDSLKNADNQNKSELSKSKRWSFQRSESSVGSSCRHSTSFGLPTGANILDPKVETPREEDVPSQEVPLWWLFSLNKPEIPVLLMGSIAATANGAIWPVFGLLLSSAIKTFYEPFNELKKDSKFWALMFVTLGLASLIALIARGYFFLWLAIS 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00639 757 SUPERFAMILY ABC transporter transmembrane region 674 755 IPR036640 GO:0005524|GO:0016021
Aip06g00639 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 601 IPR027417 -
Aip06g00639 757 Gene3D - 353 602 IPR027417 -
Aip06g00639 757 Pfam ABC transporter transmembrane region 40 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip06g00639 757 Gene3D ABC transporter type 1, transmembrane domain 27 622 IPR036640 GO:0005524|GO:0016021
Aip06g00639 757 PANTHER - 11 751 - -
Aip06g00639 757 SMART AAA_5 390 582 IPR003593 -
Aip06g00639 757 Gene3D ABC transporter type 1, transmembrane domain 656 757 IPR036640 GO:0005524|GO:0016021
Aip06g00639 757 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Aip06g00639 757 SUPERFAMILY ABC transporter transmembrane region 27 347 IPR036640 GO:0005524|GO:0016021
Aip06g00639 757 CDD ABC_MTABC3_MDL1_MDL2 363 601 - -
Aip06g00639 757 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Aip06g00639 757 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip06g00639 757 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 11 751 - -
Aip06g00639 757 Pfam ABC transporter 382 530 IPR003439 GO:0005524
Aip06g00639 757 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00639 Aip-Chr6 8353895 8356824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00639 23 740 Calmodulin-binding Proteins AT2G36910 42.156 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00639 K05658 - gmx:100800034 1100.5